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AMDSBA4_52

Alias: AMDSBA4_C51

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_52_1
unknown

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2..202
DNA (201bp) protein (67aa)
2..202 + ( gc_cont=0.532)
AMDSBA4_52_2
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

380..841
DNA (462bp) protein (154aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=4 to=153 evalue=5.7e-29 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=36 to=123 evalue=5.4e-15 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=43 to=119 evalue=1.2e-13 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
GNAT (db=ProfileScan db_id=PS51186 from=4 to=137 evalue=18.09 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
AMDSBA4_52_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(898..1566)
DNA (669bp) protein (223aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=1.6e-80 bit_score=304.7 identity=75.2 coverage=90.13452914798206)
SIGMA70_1 (db=PatternScan db_id=PS00715 from=60 to=73 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA4_52_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1874..2674)
DNA (801bp) protein (267aa)
TrmH family RNA methyltransferase
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=19 Tax=Xanthomonas RepID=RLMB_XANAC (db=UNIREF evalue=3.6e-42 bit_score=177.6 identity=39.6 coverage=90.63670411985018)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=23 to=263 evalue=2.2e-62 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH family GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=70 to=263 evalue=3.9e-54)
AMDSBA4_52_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2671..4074)
DNA (1404bp) protein (468aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=SYC_AZOPC (db=UNIREF evalue=1.9e-75 bit_score=288.9 identity=34.3 coverage=97.64957264957265)
cysS: cysteinyl-tRNA synthetase (db=HMMTigr db_id=TIGR00435 from=1 to=464 evalue=1.6e-161 interpro_id=IPR015803 interpro_description=Cysteinyl-tRNA synthetase GO=Molecular Function: cysteine-tRNA ligase activity (GO:0004817), Molecular Function: ATP binding (GO:0005524), Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423))
AMDSBA4_52_6
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4127..5014)
DNA (888bp) protein (296aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Anaerostipes RepID=B0MHU0_9FIRM (db=UNIREF evalue=2.6e-33 bit_score=148.3 identity=35.0 coverage=84.45945945945947)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA4_52_7
unknown

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5128..5247
DNA (120bp) protein (40aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA4_52_8
unknown

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5380..6549
DNA (1170bp) protein (390aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=5.0)
AMDSBA4_52_9
unknown

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6551..6805
DNA (255bp) protein (85aa)
6551..6805 + ( gc_cont=0.447)
AMDSBA4_52_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7128..7790
DNA (663bp) protein (221aa)
cell wall hydrolase/autolysin
Cell wall hydrolase/autolysin n=1 Tax=Desulfitobacterium dichloroeliminans LMG P-21439 RepID=H1IJ07_9FIRM (db=UNIREF evalue=3.4e-22 bit_score=110.9 identity=32.2 coverage=95.02262443438913)
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=28 to=217 evalue=1.5e-43)
(db=HMMPfam db_id=PF01520 from=31 to=209 evalue=5.3e-42 interpro_id=IPR002508 interpro_description=Cell wall hydrolase/autolysin, catalytic GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
AMDSBA4_52_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7821..8525)
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Thermobacillus composti KWC4 RepID=G4EBQ9_9BACL (db=UNIREF evalue=1.4e-21 bit_score=109.0 identity=36.4 coverage=93.61702127659575)
ISPD (db=PatternScan db_id=PS01295 from=104 to=111 evalue=0.0 interpro_id=IPR018294 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=233 evalue=1.4e-51)
AMDSBA4_52_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8735..9865)
DNA (1131bp) protein (377aa)
Spore germination protein
Spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0W5_9FIRM (db=UNIREF evalue=8.4e-37 bit_score=160.2 identity=30.1 coverage=94.6949602122016)
transmembrane_regions (db=TMHMM db_id=tmhmm from=348 to=367)
transmembrane_regions (db=TMHMM db_id=tmhmm from=315 to=333)
AMDSBA4_52_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9862..10920)
DNA (1059bp) protein (353aa)
spore germination protein, GerC family protein
Germination protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I5G8_SULAT (db=UNIREF evalue=3.9e-28 bit_score=131.3 identity=27.8 coverage=87.25212464589235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Spore germination protein, GerC family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7S5_SULAT
AMDSBA4_52_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10917..12506)
DNA (1590bp) protein (530aa)
GerA spore germination protein
GerA spore germination protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTF2_9FIRM (db=UNIREF evalue=1.8e-125 bit_score=455.3 identity=48.9 coverage=86.9811320754717)
transmembrane_regions (db=TMHMM db_id=tmhmm from=308 to=330)
transmembrane_regions (db=TMHMM db_id=tmhmm from=345 to=367)
AMDSBA4_52_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13009..14322
DNA (1314bp) protein (438aa)
cell envelope-related transcriptional attenuator
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator n=2 Tax=Sulfobacillus acidophilus RepID=G8TVD5_9FIRM (db=UNIREF evalue=5.2e-123 bit_score=446.8 identity=55.9 coverage=92.00913242009132)
seg (db=Seg db_id=seg from=24 to=38)
AMDSBA4_52_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14377..15582)
DNA (1206bp) protein (402aa)
integrase catalytic subunit rbh
Integrase catalytic region n=2 Tax=Sulfobacillus acidophilus RepID=G8TV33_9FIRM (db=UNIREF evalue=4.6e-166 bit_score=589.7 identity=70.2 coverage=93.03482587064677)
seg (db=Seg db_id=seg from=361 to=375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA4_52_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15659..17044)
DNA (1386bp) protein (462aa)
major facilitator superfamily protein
major facilitator superfamily protein
Arabinose efflux permease family protein n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C7R6_9CREN (db=UNIREF evalue=1.1e-91 bit_score=342.8 identity=43.0 coverage=95.67099567099568)
transmembrane_regions (db=TMHMM db_id=tmhmm from=387 to=409)
AMDSBA4_52_18
unknown

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17348..18202
DNA (855bp) protein (285aa)
seg (db=Seg db_id=seg from=121 to=141)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=19 to=97 evalue=4.2e-07)
AMDSBA4_52_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19152..19871)
DNA (720bp) protein (240aa)
IstB domain-containing protein ATP-binding protein
IstB domain protein ATP-binding protein n=3 Tax=Sulfobacillus acidophilus RepID=G8TZX9_9FIRM (db=UNIREF evalue=4.5e-52 bit_score=210.3 identity=72.7 coverage=57.49999999999999)
seg (db=Seg db_id=seg from=131 to=142)
(db=HMMPfam db_id=PF01695 from=2 to=116 evalue=8.0e-41 interpro_id=IPR002611 interpro_description=IstB-like ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524))
AMDSBA4_52_20
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(20012..21034)
DNA (1023bp) protein (341aa)
Tyrosine recombinase XerD
Tyrosine recombinase XerD
Integrase family protein n=3 Tax=Sulfobacillus acidophilus RepID=G8TYS5_9FIRM (db=UNIREF evalue=2.2e-81 bit_score=308.1 identity=48.1 coverage=99.12023460410558)
AMDSBA4_52_21
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21031..21555)
DNA (525bp) protein (175aa)
integrase family protein
Predicted phage-specific integrase n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHZ3_DESAH (db=UNIREF evalue=1.9e-31 bit_score=141.4 identity=44.0 coverage=95.42857142857143)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=1 to=161 evalue=4.0e-27 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=1 to=157 evalue=6.0e-24 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Displaying 21 items

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