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AMDSBA4_78

Alias: AMDSBA4_C77

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_78_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(99..512)
DNA (414bp) protein (138aa)
RNA binding S1 domain-containing protein
RNA binding S1 domain protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WRK4_BACT2 (db=UNIREF evalue=1.7e-35 bit_score=154.5 identity=57.9 coverage=96.37681159420289)
seg (db=Seg db_id=seg from=86 to=103)
coiled-coil (db=Coil db_id=coil from=105 to=126 evalue=NA)
AMDSBA4_78_2
unknown

Not on your lists

comp(621..890)
DNA (270bp) protein (90aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=4 to=13)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=31 evalue=6.0)
AMDSBA4_78_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(887..1123)
DNA (237bp) protein (79aa)
ECF subfamily RNA polymerase sigma-24 factor
Sigma-70 region 4 type 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB7_9FIRM (db=UNIREF evalue=5.0e-24 bit_score=115.5 identity=74.0 coverage=96.20253164556962)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=25 to=52 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF08281 from=8 to=52 evalue=2.7e-08 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA4_78_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1225..1635)
DNA (411bp) protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
AMDSBA4_78_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1648..1941)
DNA (294bp) protein (98aa)
sporulation protein YabP
Sporulation protein YabP n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB5_9FIRM (db=UNIREF evalue=1.3e-21 bit_score=107.8 identity=56.8 coverage=87.75510204081633)
spore_yabP: sporulation protein YabP (db=HMMTigr db_id=TIGR02892 from=14 to=97 evalue=2.5e-26 interpro_id=IPR012504 interpro_description=Sporulation protein YabP)
(db=HMMPfam db_id=PF07873 from=14 to=80 evalue=7.4e-19 interpro_id=IPR022476 interpro_description=Sporulation protein YabP/YqfC)
AMDSBA4_78_6
Bacillus marmarensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2192..2839
DNA (648bp) protein (216aa)
haloacid dehalogenase
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R329_JONDD (db=UNIREF evalue=1.1e-33 bit_score=149.1 identity=40.0 coverage=97.68518518518519)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=215 evalue=3.6e-49 interpro_id=IPR023214 interpro_description=HAD-like domain)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=4 to=215 evalue=3.4e-20 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA4_78_7

Not on your lists

comp(2849..3949)
DNA (1101bp) protein (367aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Synechococcus RepID=DDL_SYNS3 (db=UNIREF evalue=1.9e-78 bit_score=298.5 identity=45.4 coverage=94.55040871934605)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=108 to=119 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=297 to=326 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
AMDSBA4_78_8
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4093..4332)
DNA (240bp) protein (80aa)
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=1 to=79 evalue=1.1e-20 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=78 evalue=1.1e-18)
(db=HMMPfam db_id=PF01479 from=1 to=47 evalue=7.8e-13 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
no description (db=HMMSmart db_id=SM00363 from=1 to=68 evalue=2.5e-11 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
AMDSBA4_78_9
Bacillus vireti, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4521..5618
DNA (1098bp) protein (366aa)
peptidase S58 DmpA
Aminopeptidase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1C8_9RHOB (db=UNIREF evalue=7.7e-120 bit_score=436.0 identity=59.4 coverage=96.72131147540983)
DmpA/ArgJ-like (db=superfamily db_id=SSF56266 from=2 to=364 evalue=3.6e-118 interpro_id=IPR016117 interpro_description=Peptidase S58 DmpA/arginine biosynthesis protein ArgJ GO=Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042), Molecular Function: glutamate N-acetyltransferase activity (GO:0004358), Biological Process: arginine biosynthetic process (GO:0006526))
AMDSBA4_78_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5678..5953)
DNA (276bp) protein (92aa)
hupB; histone family protein DNA-binding protein
DNA-binding protein HU-1 n=1 Tax=Bacillus halodurans C-125 RepID=DBH2_BACHD (db=UNIREF evalue=3.2e-22 bit_score=109.8 identity=59.6 coverage=95.65217391304348)
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=3.9e-44 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
AMDSBA4_78_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6056..6904)
DNA (849bp) protein (283aa)
mazG; hypothetical protein
Mazg protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCL5_9RHOB (db=UNIREF evalue=2.1e-24 bit_score=118.6 identity=31.3 coverage=83.74558303886926)
seg (db=Seg db_id=seg from=115 to=126)
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=74 to=177 evalue=1.1e-19)
AMDSBA4_78_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6964..8493)
DNA (1530bp) protein (510aa)
polysaccharide biosynthesis protein
Stage V sporulation protein B n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MT99_9FIRM (db=UNIREF evalue=1.5e-57 bit_score=229.6 identity=30.3 coverage=97.6470588235294)
transmembrane_regions (db=TMHMM db_id=tmhmm from=384 to=406)
seg (db=Seg db_id=seg from=289 to=303)
AMDSBA4_78_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8565..9002)
DNA (438bp) protein (146aa)
hemL; glutamate-1-semialdehyde-2,1-aminomutase
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=GSA_SYNWW (db=UNIREF evalue=1.7e-22 bit_score=111.3 identity=39.4 coverage=96.57534246575342)
GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE (db=HMMPanther db_id=PTHR11986:SF5 from=1 to=143 evalue=9.1e-53 interpro_id=IPR004639 interpro_description=Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014), Molecular Function: glutamate-1-semialdehyde 2,1-aminomutase activity (GO:0042286))
AMINOTRANSFERASE CLASS III (db=HMMPanther db_id=PTHR11986 from=1 to=143 evalue=9.1e-53 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_78_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10055..10606
DNA (552bp) protein (184aa)
putative permease
Putative permease n=2 Tax=Sulfobacillus acidophilus RepID=F8I5V5_SULAT (db=UNIREF evalue=9.6e-71 bit_score=271.9 identity=72.7 coverage=92.93478260869566)
seg (db=Seg db_id=seg from=110 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
AMDSBA4_78_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10805..11200
DNA (396bp) protein (132aa)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=2 to=128 evalue=1.1e-15)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=8 to=129 evalue=7.8e-18 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
HEAT SHOCK PROTEIN 16 (db=HMMPanther db_id=PTHR11527:SF15 from=2 to=128 evalue=1.1e-15)
no description (db=Gene3D db_id=G3DSA:2.60.40.790 from=6 to=128 evalue=5.3e-15)
AMDSBA4_78_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11271..12074)
DNA (804bp) protein (268aa)
hypothetical protein
hypothetical protein
Band 7 protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSR6_9FIRM (db=UNIREF evalue=6.3e-95 bit_score=352.8 identity=68.4 coverage=97.01492537313433)
AMDSBA4_78_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12285..13217)
DNA (933bp) protein (311aa)
ribokinase (EC:2.7.1.15) rbh
ribokinase (EC:2.7.1.15) rbh
Ribokinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TTN3_9FIRM (db=UNIREF evalue=9.5e-87 bit_score=325.9 identity=55.4 coverage=97.10610932475883)
AMDSBA4_78_18
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13427..14824)
DNA (1398bp) protein (466aa)
FAD linked oxidase domain-containing protein
FAD linked oxidase domain-containing protein
D-lactate dehydrogenase [cytochrome] 1, putative (D-lactate ferricytochrome c oxidoreductase, putative) n=3 Tax=Candida RepID=B9WAY2_CANDC (db=UNIREF evalue=5.4e-70 bit_score=270.8 identity=35.8 coverage=91.63090128755364)
seg (db=Seg db_id=seg from=313 to=330)
AMDSBA4_78_19

Not on your lists

comp(15051..15635)
DNA (585bp) protein (195aa)
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D9QJ35_BRESC (db=UNIREF evalue=1.5e-42 bit_score=178.3 identity=46.8 coverage=95.38461538461539)
seg (db=Seg db_id=seg from=110 to=121)
seg (db=Seg db_id=seg from=164 to=176)
AMDSBA4_78_20
Kocuria varians, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16158..17459
DNA (1302bp) protein (434aa)
Modification methylase MvaI
Site-specific DNA-methyltransferase (Cytosine-N(4)-specific) n=1 Tax=Prevotella marshii DSM 16973 RepID=E0NUQ1_9BACT (db=UNIREF evalue=1.5e-74 bit_score=285.8 identity=39.8 coverage=92.85714285714286)
N4_MTASE (db=PatternScan db_id=PS00093 from=258 to=263 evalue=0.0 interpro_id=IPR017985 interpro_description=DNA methylase, N-4 cytosine-specific, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: site-specific DNA-methyltransferase (cytosine-N4-specific) activity (GO:0015667), Biological Process: N-4 methylation of cytosine (GO:0090124))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=13 to=367 evalue=7.5e-15)
AMDSBA4_78_21
Thermoplasmatales archaeon I-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

17701..18621
DNA (921bp) protein (307aa)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=140 to=238 evalue=6.5e-10 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
(db=HMMPfam db_id=PF07883 from=161 to=231 evalue=7.1e-10 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=155 to=212 evalue=1.7e-05 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
Uncharacterized protein {ECO:0000313|EMBL:EQB65552.1}; TaxID=667138 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon I-pl
AMDSBA4_78_22
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18666..19127)
DNA (462bp) protein (154aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q7C0_CATAD (db=UNIREF evalue=1.1e-11 bit_score=75.5 identity=35.9 coverage=86.36363636363636)
seg (db=Seg db_id=seg from=59 to=68)
YbjQ-like (db=superfamily db_id=SSF117782 from=42 to=141 evalue=6.9e-19)
AMDSBA4_78_23
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19151..20695)
DNA (1545bp) protein (515aa)
AMP-dependent synthetase/ligase rbh
AMP-dependent synthetase and ligase n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RQ31_HALTV (db=UNIREF evalue=2.7e-70 bit_score=271.9 identity=36.7 coverage=94.75728155339806)
AMP_BINDING (db=PatternScan db_id=PS00455 from=169 to=180 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=5 to=514 evalue=5.8e-166)
AMDSBA4_78_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20711..21130)
DNA (420bp) protein (140aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U186_9FIRM (db=UNIREF evalue=1.6e-41 bit_score=174.5 identity=62.0 coverage=97.85714285714285)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=132)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
AMDSBA4_78_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21203..21421)
DNA (219bp) protein (73aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U185_9FIRM (db=UNIREF evalue=3.6e-13 bit_score=79.3 identity=62.5 coverage=84.93150684931507)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
AMDSBA4_78_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21405..22379)
DNA (975bp) protein (325aa)
cytochrome b/b6 domain protein
Cytochrome b/b6 domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U184_9FIRM (db=UNIREF evalue=2.4e-117 bit_score=427.6 identity=63.1 coverage=98.15384615384616)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=284)
AMDSBA4_78_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22381..23013)
DNA (633bp) protein (211aa)
cytochrome b/b6 protein
Cytochrome b/b6 domain n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBM3_CALMQ (db=UNIREF evalue=4.4e-11 bit_score=73.9 identity=24.6 coverage=92.89099526066352)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=178)
AMDSBA4_78_28
unknown

Not on your lists

comp(23018..23137)
DNA (120bp) protein (40aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
AMDSBA4_78_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(23395..24231)
DNA (837bp) protein (279aa)
putative creatininase
Putative creatinine amidohydrolase n=2 Tax=Clostridium botulinum RepID=B1QHS8_CLOBO (db=UNIREF evalue=2.9e-18 bit_score=98.2 identity=24.3 coverage=86.02150537634408)
Creatininase (db=superfamily db_id=SSF102215 from=2 to=253 evalue=2.2e-40 interpro_id=IPR024087 interpro_description=Creatininase-like domain)
(db=HMMPfam db_id=PF02633 from=6 to=249 evalue=8.9e-40 interpro_id=IPR003785 interpro_description=Creatininase/formamide hydrolase)
AMDSBA4_78_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25371..25808
DNA (438bp) protein (146aa)
codA; cytosine deaminase
Cytosine deaminase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZN9_ALCXX (db=UNIREF evalue=8.3e-17 bit_score=92.4 identity=42.5 coverage=77.3972602739726)
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=81 evalue=1.6e-19)
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=1 to=70 evalue=1.0e-16)
Displaying items 1-30 of 31 in total

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