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AMDSBA5_27

Alias: AMDSBA5_C26

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_27_1
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

886..1707
-----------------
DNA (822bp)
protein (274aa)
putative sporulation protein YtxC
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=Q67L98_SYMTH (db=UNIREF evalue=4.0e-12 bit_score=77.8 identity=28.1 coverage=78.83211678832117)
seg (db=Seg db_id=seg from=191 to=215)
(db=HMMPfam db_id=PF08812 from=41 to=242 evalue=7.6e-31 interpro_id=IPR014199 interpro_description=Sporulation protein YtxC)
AMDSBA5_27_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1946..3844
-----------------
DNA (1899bp)
protein (633aa)
threonyl-tRNA synthetase (EC:6.1.1.3)
threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=3 Tax=Haloarcula RepID=SYT_HALMA (db=UNIREF evalue=6.1e-149 bit_score=533.5 identity=43.7 coverage=94.7867298578199)
AMDSBA5_27_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4073..4543
-----------------
DNA (471bp)
protein (157aa)
translation initiation factor 3 (bIF-3)
Translation initiation factor IF-3 n=3 Tax=Anaeromyxobacter RepID=IF3_ANADE (db=UNIREF evalue=2.1e-42 bit_score=177.6 identity=53.6 coverage=96.81528662420382)
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=155 evalue=9.6e-59 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=7 to=154 evalue=6.1e-54 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
AMDSBA5_27_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4548..4748
-----------------
DNA (201bp)
protein (67aa)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=5.8e-31 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF01632 from=2 to=62 evalue=4.2e-24 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=3.0e-23)
RIBOSOMALL35 (db=FPrintScan db_id=PR00064 from=3 to=20 evalue=2.4e-18 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA5_27_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4786..5139
-----------------
DNA (354bp)
protein (118aa)
BSCG--ribosomal--protein--L20
50S ribosomal protein L20P
50S ribosomal protein L20 n=3 Tax=Chloroflexus RepID=RL20_CHLAA (db=UNIREF evalue=1.3e-33 bit_score=147.9 identity=62.3 coverage=95.76271186440678)
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
AMDSBA5_27_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5142..5984
-----------------
DNA (843bp)
protein (281aa)
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Ectocarpus siliculosus RepID=D7FLV7_ECTSI (db=UNIREF evalue=3.9e-23 bit_score=114.4 identity=31.3 coverage=93.23843416370107)
seg (db=Seg db_id=seg from=15 to=20)
RNA-METHYLASE-RELATED (db=HMMPanther db_id=PTHR12029:SF8 from=80 to=269 evalue=1.8e-54)
AMDSBA5_27_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6244..7296
-----------------
DNA (1053bp)
protein (351aa)
BSCG--tRNA--synthetase--Phenylalanyl--alpha
pheS; phenylalanyl-tRNA synthetase subunit alpha
pheS; phenylalanyl-tRNA synthetase subunit alpha
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NRP9_9FIRM (db=UNIREF evalue=5.1e-89 bit_score=333.6 identity=46.8 coverage=94.30199430199431)
AMDSBA5_27_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7293..9632
-----------------
DNA (2340bp)
protein (780aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TWH5_9FIRM (db=UNIREF evalue=1.1e-195 bit_score=689.1 identity=46.9 coverage=99.48717948717949)
seg (db=Seg db_id=seg from=530 to=546)
AMDSBA5_27_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9718..10008
-----------------
DNA (291bp)
protein (97aa)
cell division protein ZapA
Cell division protein ZapA n=2 Tax=Sulfobacillus acidophilus RepID=G8TWH6_9FIRM (db=UNIREF evalue=6.3e-21 bit_score=105.5 identity=52.1 coverage=94.84536082474226)
(db=HMMPfam db_id=PF05164 from=7 to=78 evalue=5.0e-16 interpro_id=IPR007838 interpro_description=Cell division protein ZapA-like)
Cell division protein ZapA-like (db=superfamily db_id=SSF102829 from=6 to=96 evalue=2.4e-13 interpro_id=IPR007838 interpro_description=Cell division protein ZapA-like)
AMDSBA5_27_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10514..12874
-----------------
DNA (2361bp)
protein (787aa)
MutS2 protein
MutS2 protein
MutS2 protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU8_THET1 (db=UNIREF evalue=2.8e-135 bit_score=488.4 identity=37.8 coverage=97.20457433290979)
coiled-coil (db=Coil db_id=coil from=523 to=569 evalue=NA)
AMDSBA5_27_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12939..14135
-----------------
DNA (1197bp)
protein (399aa)
Tyrosine--tRNA ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWJ8_9FIRM (db=UNIREF evalue=2.2e-152 bit_score=544.3 identity=66.0 coverage=98.99749373433583)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
AMDSBA5_27_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14244..14882
-----------------
DNA (639bp)
protein (213aa)
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWK0_9FIRM (db=UNIREF evalue=6.0e-40 bit_score=169.9 identity=46.0 coverage=96.24413145539906)
Activating enzymes of the ubiquitin-like proteins (db=superfamily db_id=SSF69572 from=2 to=195 evalue=1.9e-36 interpro_id=IPR009036 interpro_description=Molybdenum cofactor biosynthesis, MoeB)
(db=HMMPfam db_id=PF00899 from=2 to=126 evalue=1.1e-28 interpro_id=IPR000594 interpro_description=UBA/THIF-type NAD/FAD binding fold GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA5_27_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14869..15216
-----------------
DNA (348bp)
protein (116aa)
seg (db=Seg db_id=seg from=99 to=108)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=2 to=54 evalue=0.00092 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IAZ9_SULAT
AMDSBA5_27_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15213..16919
-----------------
DNA (1707bp)
protein (569aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthase n=2 Tax=Leptospirillum sp. Group II RepID=A3EVA0_9BACT (db=UNIREF evalue=3.7e-153 bit_score=547.4 identity=49.5 coverage=99.64850615114236)
AMDSBA5_27_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16987..17733
-----------------
DNA (747bp)
protein (249aa)
hypothetical protein
Probable transcriptional regulatory protein PTH_1024 n=1 Tax=Pelotomaculum thermopropionicum SI RepID=Y1024_PELTS (db=UNIREF evalue=2.3e-75 bit_score=287.7 identity=55.6 coverage=96.3855421686747)
TIGR01033: DNA-binding regulatory protein, (db=HMMTigr db_id=TIGR01033 from=1 to=238 evalue=8.9e-94 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
YebC-like (db=superfamily db_id=SSF75625 from=5 to=246 evalue=3.5e-91 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
AMDSBA5_27_16
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17690..18349)
-----------------
DNA (660bp)
protein (220aa)
type 11 methyltransferase
Probable methyltransferase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIS9_9ALTE (db=UNIREF evalue=2.1e-16 bit_score=91.7 identity=38.4 coverage=66.81818181818183)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=47 to=205 evalue=1.6e-23)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=49 to=190 evalue=1.1e-21)
AMDSBA5_27_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18473..18964
-----------------
DNA (492bp)
protein (164aa)
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Orientia tsutsugamushi RepID=RUVC_ORITB (db=UNIREF evalue=2.7e-16 bit_score=90.9 identity=32.5 coverage=90.85365853658537)
RUVC (db=PatternScan db_id=PS01321 from=113 to=148 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO=Molecular Function: crossover junction endodeoxyribonuclease activity (GO:0008821))
(db=HMMPfam db_id=PF02075 from=3 to=150 evalue=3.7e-52 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
AMDSBA5_27_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18957..19544
-----------------
DNA (588bp)
protein (196aa)
Holliday junction DNA helicase subunit RuvA
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=RUVA_DESRM (db=UNIREF evalue=1.2e-26 bit_score=125.6 identity=41.6 coverage=97.44897959183673)
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=193 evalue=2.5e-33 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=63 evalue=1.6e-18 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
AMDSBA5_27_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19562..20587
-----------------
DNA (1026bp)
protein (342aa)
ruvB; Holliday junction DNA helicase RuvB
ruvB; Holliday junction DNA helicase RuvB
Holliday junction ATP-dependent DNA helicase RuvB n=3 Tax=Nitrosococcus RepID=RUVB_NITOC (db=UNIREF evalue=1.1e-115 bit_score=422.2 identity=63.7 coverage=90.64327485380117)
AMDSBA5_27_20
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20612..21355
-----------------
DNA (744bp)
protein (248aa)
RNA polymerase, sigma 28 subunit, SigI
Sigma factor SgiI n=1 Tax=Bacillus sp. SG-1 RepID=A6CM50_9BACI (db=UNIREF evalue=7.0e-40 bit_score=169.9 identity=38.8 coverage=94.35483870967742)
seg (db=Seg db_id=seg from=193 to=208)
spore_sigI: RNA polymerase sigma-I factor (db=HMMTigr db_id=TIGR02895 from=16 to=240 evalue=2.0e-67 interpro_id=IPR014244 interpro_description=RNA polymerase sigma-I type)
AMDSBA5_27_21
unknown

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21359..22408
-----------------
DNA (1050bp)
protein (350aa)
seg (db=Seg db_id=seg from=56 to=68)
seg (db=Seg db_id=seg from=219 to=236)
AMDSBA5_27_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22488..22796
-----------------
DNA (309bp)
protein (103aa)
protein translocase subunit yajC
Protein translocase subunit yajC n=2 Tax=Sulfobacillus acidophilus RepID=G8TWZ8_9FIRM (db=UNIREF evalue=1.8e-26 bit_score=124.0 identity=64.1 coverage=87.37864077669903)
seg (db=Seg db_id=seg from=60 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA5_27_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22889..24142
-----------------
DNA (1254bp)
protein (418aa)
glutamate dehydrogenase (EC:1.4.1.2)
glutamate dehydrogenase (EC:1.4.1.2)
Glutamate dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6P8G3_9ARCH (db=UNIREF evalue=3.3e-103 bit_score=380.9 identity=47.7 coverage=98.32535885167464)
AMDSBA5_27_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24191..25738
-----------------
DNA (1548bp)
protein (516aa)
mmdA; carboxyl transferase
mmdA; carboxyl transferase
Propionyl-CoA carboxylase n=2 Tax=Bacillus RepID=E5WIC0_9BACI (db=UNIREF evalue=1.4e-183 bit_score=648.3 identity=61.4 coverage=99.03100775193798)
ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED (db=HMMPanther db_id=PTHR22855 from=32 to=515 evalue=5.7e-266)
AMDSBA5_27_25
unknown

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25788..25946
-----------------
DNA (159bp)
protein (53aa)
25788..25946 + ( gc_cont=0.491)
AMDSBA5_27_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26007..26417
-----------------
DNA (411bp)
protein (137aa)
seg (db=Seg db_id=seg from=81 to=93)
seg (db=Seg db_id=seg from=27 to=60)
BIOTIN (db=PatternScan db_id=PS00188 from=90 to=107 evalue=0.0 interpro_id=IPR001882 interpro_description=Biotin-binding site)
Single hybrid motif (db=superfamily db_id=SSF51230 from=51 to=134 evalue=2.0e-23 interpro_id=IPR011053 interpro_description=Single hybrid motif)
AMDSBA5_27_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26420..27634
-----------------
DNA (1215bp)
protein (405aa)
LmbE family protein
GlcNAc-PI de-N-acetylase family protein n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7RA02_9THEO (db=UNIREF evalue=9.9e-44 bit_score=183.3 identity=37.5 coverage=63.70370370370371)
seg (db=Seg db_id=seg from=93 to=107)
LmbE-like (db=superfamily db_id=SSF102588 from=1 to=272 evalue=2.4e-41 interpro_id=IPR024078 interpro_description=Putative deacetylase LmbE-like domain)
AMDSBA5_27_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27687..28121)
-----------------
DNA (435bp)
protein (145aa)
hypothetical protein
CBS domain containing protein n=3 Tax=Alicyclobacillus acidocaldarius RepID=B7DSK6_9BACL (db=UNIREF evalue=7.4e-34 bit_score=149.1 identity=56.2 coverage=98.62068965517241)
INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11911 from=1 to=135 evalue=1.3e-29)
INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11911:SF5 from=1 to=135 evalue=1.3e-29)
AMDSBA5_27_29
unknown

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comp(28172..28267)
-----------------
DNA (96bp)
protein (32aa)
28172..28267 - ( gc_cont=0.562)
Displaying 29 items

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