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AMDSBA5_29

Alias: AMDSBA5_C28

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_29_1
unknown

Not on your lists

1..456
DNA (456bp) protein (152aa)
1..456 + ( gc_cont=0.539)
AMDSBA5_29_2
unknown

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485..1207
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=86 to=97)
seg (db=Seg db_id=seg from=43 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=5.0)
AMDSBA5_29_3
unknown

Not on your lists

1477..1638
DNA (162bp) protein (54aa)
1477..1638 + ( gc_cont=0.549)
AMDSBA5_29_4
unknown

Not on your lists

1800..1982
DNA (183bp) protein (61aa)
seg (db=Seg db_id=seg from=8 to=22)
AMDSBA5_29_5
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2190..2600
DNA (411bp) protein (137aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0AW05_ARTS2 (db=UNIREF evalue=3.5e-09 bit_score=67.0 identity=41.4 coverage=64.96350364963503)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
AMDSBA5_29_6
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(2893..3267)
DNA (375bp) protein (125aa)
response regulator receiver protein
Chemotaxis protein CheV n=1 Tax=uncultured marine group III euryarchaeote AD1000-40-D7 RepID=B3V616_9EURY (db=UNIREF evalue=1.1e-30 bit_score=138.3 identity=57.8 coverage=92.0)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=120 evalue=1.9e-35 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=3 to=119 evalue=4.3e-34)
AMDSBA5_29_7
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(3286..4602)
DNA (1317bp) protein (439aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=364 to=386)
transmembrane_regions (db=TMHMM db_id=tmhmm from=391 to=413)
seg (db=Seg db_id=seg from=374 to=386)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
AMDSBA5_29_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4595..5263)
DNA (669bp) protein (223aa)
Homodimeric domain of signal transducing histidine kinase (db=superfamily db_id=SSF47384 from=18 to=84 evalue=1.9e-07 interpro_id=IPR009082 interpro_description=Signal transduction histidine kinase, homodimeric GO=Molecular Function: signal transducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165))
(db=HMMPfam db_id=PF00512 from=19 to=79 evalue=1.5e-06 interpro_id=IPR003661 interpro_description=Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
no description (db=HMMSmart db_id=SM00388 from=15 to=82 evalue=0.00014 interpro_id=IPR003661 interpro_description=Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0016020))
PAS/PAC sensor hybrid histidine kinase
AMDSBA5_29_9
Xenococcus sp. PCC 7305, Xenococcus, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(5343..7136)
DNA (1794bp) protein (598aa)
response regulator receiver sensor hybrid histidine kinase
Two-component system sensory histidine kinase n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZET9_NODSP (db=UNIREF evalue=9.4e-67 bit_score=260.4 identity=51.0 coverage=46.32107023411371)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=87)
AMDSBA5_29_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(7206..7721)
DNA (516bp) protein (172aa)
coiled-coil (db=Coil db_id=coil from=143 to=171 evalue=NA)
RECEPTOR HISTIDINE KINASE (DHKB, DHKE) (db=HMMPanther db_id=PTHR23283:SF42 from=14 to=134 evalue=4.6e-23)
CheY-like (db=superfamily db_id=SSF52172 from=8 to=167 evalue=1.4e-33 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
no description (db=HMMSmart db_id=SM00448 from=11 to=126 evalue=1.9e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA5_29_11
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7718..8977)
DNA (1260bp) protein (420aa)
Putative membrane protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2FLE9_9FIRM (db=UNIREF evalue=3.8e-22 bit_score=111.7 identity=22.9 coverage=91.9047619047619)
major facilitator superfamily transporter (db=KEGG evalue=7.2e-21 bit_score=107.1 identity=24.7 coverage=85.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
AMDSBA5_29_12
unknown

Not on your lists

comp(8989..9273)
DNA (285bp) protein (95aa)
8989..9273 - ( gc_cont=0.460)
AMDSBA5_29_13
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9422..9700)
DNA (279bp) protein (93aa)
no description (db=HMMSmart db_id=SM00421 from=17 to=74 evalue=4.2e-20 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF00196 from=20 to=71 evalue=7.2e-19 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=4 to=76 evalue=5.8e-16 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=9 to=73 evalue=2.2e-14 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA5_29_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(9706..12240)
DNA (2535bp) protein (845aa)
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=D3PUV9_STANL (db=UNIREF evalue=4.3e-25 bit_score=122.5 identity=26.2 coverage=65.56213017751479)
seg (db=Seg db_id=seg from=654 to=672)
seg (db=Seg db_id=seg from=596 to=610)
AMDSBA5_29_15
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12668..14479)
DNA (1812bp) protein (604aa)
sensory box protein
Sensory box/GGDEF family protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I5K7_VIBHO (db=UNIREF evalue=1.6e-42 bit_score=179.9 identity=27.5 coverage=76.98675496688742)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=162 to=325 evalue=1.5e-37 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
EAL domain-like (db=superfamily db_id=SSF141868 from=335 to=579 evalue=1.5e-64 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA5_29_16
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(14840..15658)
DNA (819bp) protein (273aa)
DNA adenine methylase Dam (EC:2.1.1.72)
DNA adenine methylase Dam (EC:2.1.1.72)
DNA adenine methylase Dam n=3 Tax=Nitrosococcus RepID=Q3JE76_NITOC (db=UNIREF evalue=7.6e-80 bit_score=302.8 identity=58.1 coverage=96.7032967032967)
AMDSBA5_29_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15730..16323)
DNA (594bp) protein (198aa)
seg (db=Seg db_id=seg from=114 to=129)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=2 to=193 evalue=7.5e-29)
(db=HMMPfam db_id=PF02589 from=85 to=191 evalue=5.1e-16 interpro_id=IPR003741 interpro_description=Domain of unknown function DUF162)
lactate utilization protein B/C
AMDSBA5_29_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16342..17793)
DNA (1452bp) protein (484aa)
lactate utilization protein B/C
lactate utilization protein B/C
Iron-sulfur protein n=7 Tax=Streptomyces RepID=F3NEZ8_9ACTO (db=UNIREF evalue=4.2e-81 bit_score=307.8 identity=37.5 coverage=94.42148760330579)
AMDSBA5_29_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17794..18633)
DNA (840bp) protein (280aa)
hypothetical protein
Glycolate oxidase n=2 Tax=Sulfobacillus acidophilus RepID=F8I815_SULAT (db=UNIREF evalue=8.6e-63 bit_score=246.1 identity=51.6 coverage=87.14285714285714)
(db=HMMPfam db_id=PF02754 from=176 to=238 evalue=6.3e-08 interpro_id=IPR004017 interpro_description=Cysteine-rich domain)
(db=HMMPfam db_id=PF02754 from=36 to=90 evalue=0.00063 interpro_id=IPR004017 interpro_description=Cysteine-rich domain)
AMDSBA5_29_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19094..20164
DNA (1071bp) protein (357aa)
rbsB; monosaccharide-transporting ATPase
rbsB; monosaccharide-transporting ATPase
Monosaccharide-transporting ATPase n=2 Tax=Sulfobacillus acidophilus RepID=F8I8S4_SULAT (db=UNIREF evalue=4.3e-152 bit_score=543.1 identity=75.1 coverage=99.15966386554622)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
AMDSBA5_29_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20235..21017
DNA (783bp) protein (261aa)
D-allose import ATP-binding protein AlsA n=183 Tax=Bacteria RepID=ALSA_ECOLI (db=UNIREF evalue=1.7e-28 bit_score=132.1 identity=30.7 coverage=91.57088122605363)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=14 to=258 evalue=6.9e-78)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=152 to=166 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
SUGAR ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF12 from=14 to=258 evalue=6.9e-78)
AMDSBA5_29_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21007..21960
DNA (954bp) protein (318aa)
ribose ABC transporter membrane protein
ribose ABC transporter membrane protein
Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXT9_9CLOT (db=UNIREF evalue=3.0e-27 bit_score=128.3 identity=29.2 coverage=89.62264150943396)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=36)
AMDSBA5_29_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21961..22947
DNA (987bp) protein (329aa)
Transcriptional regulator, LacI family n=2 Tax=Sulfobacillus acidophilus RepID=G8TTK1_9FIRM (db=UNIREF evalue=6.1e-108 bit_score=396.4 identity=62.0 coverage=99.3920972644377)
LacI family transcriptional regulator
LacI family transcriptional regulator
AMDSBA5_29_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23015..24034)
DNA (1020bp) protein (340aa)
hypothetical protein
hypothetical protein
Catalytic domain-containing protein of components of various dehydrogenase complexes n=2 Tax=Sulfobacillus acidophilus RepID=G8TYG1_9FIRM (db=UNIREF evalue=1.8e-83 bit_score=315.1 identity=53.5 coverage=84.41176470588235)
AMDSBA5_29_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24045..25061)
DNA (1017bp) protein (339aa)
pyruvate dehydrogenase (EC:1.2.4.1)
pyruvate dehydrogenase (EC:1.2.4.1)
Transketolase central region n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7R012_9EURY (db=UNIREF evalue=1.5e-106 bit_score=391.7 identity=56.7 coverage=97.93510324483776)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=5 to=217 evalue=1.8e-70)
AMDSBA5_29_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25085..26065)
DNA (981bp) protein (327aa)
pyruvate dehydrogenase (EC:1.2.4.1) rbh
pyruvate dehydrogenase (EC:1.2.4.1) rbh
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7R013_9EURY (db=UNIREF evalue=7.1e-93 bit_score=346.3 identity=55.5 coverage=96.3302752293578)
seg (db=Seg db_id=seg from=121 to=135)
AMDSBA5_29_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26214..27005)
DNA (792bp) protein (264aa)
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TYG4_9FIRM (db=UNIREF evalue=7.8e-106 bit_score=389.0 identity=68.4 coverage=95.45454545454545)
seg (db=Seg db_id=seg from=195 to=200)
AMDSBA5_29_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27321..28412)
DNA (1092bp) protein (364aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY71_9FIRM (db=UNIREF evalue=8.4e-127 bit_score=459.1 identity=61.7 coverage=98.35164835164835)
AMDSBA5_29_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28396..29967)
DNA (1572bp) protein (524aa)
hydantoinase/oxoprolinase rbh
hydantoinase/oxoprolinase rbh
Hydantoinase/oxoprolinase n=11 Tax=Lactobacillus RepID=C2JZN2_LACRH (db=UNIREF evalue=2.9e-136 bit_score=491.1 identity=48.1 coverage=97.51908396946564)
AMDSBA5_29_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29964..31040)
DNA (1077bp) protein (359aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis JAM81 RepID=F4PFS5_BATDJ (db=UNIREF evalue=2.0e-96 bit_score=358.2 identity=49.0 coverage=98.05013927576601)
seg (db=Seg db_id=seg from=8 to=26)
(db=HMMPfam db_id=PF06032 from=4 to=354 evalue=7.9e-131 interpro_id=IPR010318 interpro_description=Protein of unknown function DUF917)
Displaying items 1-30 of 36 in total

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