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AMDSBA5_33

Alias: AMDSBA5_C32

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_33_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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86..1774
-----------------
DNA (1689bp)
protein (563aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 RepID=F8II83_ALIAT (db=UNIREF evalue=3.5e-15 bit_score=89.0 identity=35.3 coverage=25.754884547069274)
transmembrane_regions (db=TMHMM db_id=tmhmm from=331 to=350)
transmembrane_regions (db=TMHMM db_id=tmhmm from=375 to=397)
AMDSBA5_33_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1885..2859
-----------------
DNA (975bp)
protein (325aa)
metallophosphoesterase
seg (db=Seg db_id=seg from=186 to=197)
seg (db=Seg db_id=seg from=82 to=95)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=60 to=314 evalue=8.4e-37)
AMDSBA5_33_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2856..3278
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TUD4_9FIRM (db=UNIREF evalue=9.5e-18 bit_score=95.5 identity=47.6 coverage=70.92198581560284)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Cytochrome c (db=superfamily db_id=SSF46626 from=1 to=140 evalue=4.3e-17 interpro_id=IPR009056 interpro_description=Cytochrome c domain GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
AMDSBA5_33_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3275..3505)
-----------------
DNA (231bp)
protein (77aa)
3275..3505 - ( gc_cont=0.511)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWK7_SULAD
hypothetical protein
AMDSBA5_33_5
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3790..4377
-----------------
DNA (588bp)
protein (196aa)
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=52 to=84 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=25 to=180 evalue=6.0e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=117 evalue=2.4e-22 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
(db=HMMPfam db_id=PF08281 from=126 to=176 evalue=4.0e-14 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA5_33_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4365..4991
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein (db=KEGG evalue=6.3e-10 bit_score=69.7 identity=29.6 coverage=97.60765550239235)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ43_9FIRM (db=UNIREF evalue=8.3e-10 bit_score=69.7 identity=29.6 coverage=97.60765550239235)
seg (db=Seg db_id=seg from=84 to=96)
(db=HMMPfam db_id=PF10099 from=63 to=203 evalue=1.7e-11 interpro_id=IPR018764 interpro_description=Anti-sigma K factor RskA GO=Cellular Component: plasma membrane (GO:0005886), Cellular Component: integral to membrane (GO:0016021))
AMDSBA5_33_7
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5289..5891)
-----------------
DNA (603bp)
protein (201aa)
ThiJ/PfpI domain-containing protein
Putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme n=1 Tax=Bacillus sp. B14905 RepID=A3I727_9BACI (db=UNIREF evalue=1.3e-20 bit_score=105.5 identity=30.2 coverage=90.04975124378109)
seg (db=Seg db_id=seg from=158 to=170)
THIJ/PFPI (db=HMMPanther db_id=PTHR11019 from=58 to=199 evalue=2.5e-59)
AMDSBA5_33_8
unknown

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comp(6398..6523)
-----------------
DNA (126bp)
protein (42aa)
6398..6523 - ( gc_cont=0.524)
AMDSBA5_33_9
unknown

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6857..8167
-----------------
DNA (1311bp)
protein (437aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=6 to=21)
seg (db=Seg db_id=seg from=69 to=77)
seg (db=Seg db_id=seg from=235 to=244)
AMDSBA5_33_10
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(8178..9257)
-----------------
DNA (1080bp)
protein (360aa)
hypothetical protein
Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DW13_NEMVE (db=UNIREF evalue=3.4e-11 bit_score=75.1 identity=31.9 coverage=46.666666666666664)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
AMDSBA5_33_11
Alkalibacterium sp. AK22, Alkalibacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9315..10073)
-----------------
DNA (759bp)
protein (253aa)
seg (db=Seg db_id=seg from=62 to=74)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=209 evalue=3.7e-31)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=210 evalue=1.3e-28)
(db=HMMPfam db_id=PF00535 from=7 to=129 evalue=2.0e-18 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
AMDSBA5_33_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10238..10900)
-----------------
DNA (663bp)
protein (221aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=176)
seg (db=Seg db_id=seg from=162 to=182)
transmembrane_regions (db=TMHMM db_id=tmhmm from=183 to=205)
gb def: DnaJ-related protein (db=HMMPanther db_id=PTHR11821:SF43 from=5 to=65 evalue=1.3e-10)
AMDSBA5_33_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11098..11667)
-----------------
DNA (570bp)
protein (190aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT52_9FIRM (db=UNIREF evalue=4.2e-53 bit_score=213.4 identity=59.2 coverage=92.10526315789474)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
seg (db=Seg db_id=seg from=70 to=83)
AMDSBA5_33_14
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

11847..14186
-----------------
DNA (2340bp)
protein (780aa)
penicillin acylase II
Peptidase S45 penicillin amidase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=D7AVX7_NOCDD (db=UNIREF evalue=1.5e-64 bit_score=253.4 identity=30.4 coverage=68.97435897435898)
N-terminal nucleophile aminohydrolases (Ntn hydrolases) (db=superfamily db_id=SSF56235 from=44 to=757 evalue=8.0e-177)
(db=HMMPfam db_id=PF01804 from=53 to=753 evalue=2.7e-139 interpro_id=IPR002692 interpro_description=Peptidase S45, penicillin amidase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: antibiotic biosynthetic process (GO:0017000))
AMDSBA5_33_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14183..15286)
-----------------
DNA (1104bp)
protein (368aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXZ8_9FIRM (db=UNIREF evalue=3.7e-106 bit_score=390.6 identity=54.9 coverage=96.73913043478261)
seg (db=Seg db_id=seg from=177 to=188)
AMDSBA5_33_16
GWF2_Alphaproteobacteria_58_20_curated, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15385..16689)
-----------------
DNA (1305bp)
protein (435aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1FGJ5_MICSR (db=UNIREF evalue=3.1e-43 bit_score=181.8 identity=31.1 coverage=91.0344827586207)
DNA_PHOTOLYASES_1_1 (db=PatternScan db_id=PS00394 from=274 to=286 evalue=0.0 interpro_id=IPR018394 interpro_description=Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal GO=Molecular Function: DNA photolyase activity (GO:0003913), Biological Process: DNA repair (GO:0006281))
AMDSBA5_33_17
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

17284..18408
-----------------
DNA (1125bp)
protein (375aa)
SMP-30/Gluconolaconase/LRE-like region
Putative uncharacterized protein n=1 Tax=Burkholderia sp. H160 RepID=B5WM31_9BURK (db=UNIREF evalue=6.2e-24 bit_score=117.5 identity=30.1 coverage=93.60000000000001)
seg (db=Seg db_id=seg from=291 to=302)
seg (db=Seg db_id=seg from=6 to=18)
AMDSBA5_33_18
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18405..18977)
-----------------
DNA (573bp)
protein (191aa)
HPP family protein
HPP family protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XMV7_SYNP2 (db=UNIREF evalue=4.6e-23 bit_score=113.6 identity=35.8 coverage=82.19895287958116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
AMDSBA5_33_19
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19077..19757
-----------------
DNA (681bp)
protein (227aa)
hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J8H6_NOSP7 (db=UNIREF evalue=2.5e-12 bit_score=78.2 identity=33.1 coverage=53.30396475770925)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=223 evalue=1.3e-43 interpro_id=IPR023214 interpro_description=HAD-like domain)
HALOACID DEHALOGENASE-LIKE HYDROLASE (db=HMMPanther db_id=PTHR12725 from=1 to=203 evalue=2.2e-34)
AMDSBA5_33_20
unknown

Not on your lists

comp(19765..20304)
-----------------
DNA (540bp)
protein (180aa)
seg (db=Seg db_id=seg from=124 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=156 to=175)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
AMDSBA5_33_21
unknown

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comp(20321..20698)
-----------------
DNA (378bp)
protein (126aa)
seg (db=Seg db_id=seg from=4 to=15)
AMDSBA5_33_22
unknown

Not on your lists

20940..21245
-----------------
DNA (306bp)
protein (102aa)
20940..21245 + ( gc_cont=0.464)
AMDSBA5_33_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21247..22353
-----------------
DNA (1107bp)
protein (369aa)
AIR synthase related protein domain protein
AIR synthase related protein domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVU9_9FIRM (db=UNIREF evalue=5.8e-67 bit_score=260.4 identity=42.3 coverage=90.5149051490515)
seg (db=Seg db_id=seg from=72 to=83)
PurM C-terminal domain-like (db=superfamily db_id=SSF56042 from=152 to=329 evalue=2.8e-18 interpro_id=IPR010918 interpro_description=AIR synthase-related protein, C-terminal)
AMDSBA5_33_24
unknown

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22411..22623
-----------------
DNA (213bp)
protein (71aa)
22411..22623 + ( gc_cont=0.432)
AMDSBA5_33_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22702..23919
-----------------
DNA (1218bp)
protein (406aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQY5_ALIAD (db=UNIREF evalue=1.5e-15 bit_score=89.7 identity=25.4 coverage=92.11822660098522)
seg (db=Seg db_id=seg from=388 to=401)
seg (db=Seg db_id=seg from=196 to=203)
AMDSBA5_33_26
unknown

Not on your lists

24074..24595
-----------------
DNA (522bp)
protein (174aa)
seg (db=Seg db_id=seg from=8 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF06525 from=34 to=94 evalue=5.9e-06 interpro_id=IPR010532 interpro_description=Sulfocyanin)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=6.0)
Displaying 26 items

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