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AMDSBA5_34

Alias: AMDSBA5_C33

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_34_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

167..1420
DNA (1254bp) protein (418aa)
transposase
Transposase IS116/IS110/IS902 family protein n=6 Tax=Sulfobacillus acidophilus RepID=G8TWZ7_9FIRM (db=UNIREF evalue=1.4e-114 bit_score=418.7 identity=53.2 coverage=98.80382775119617)
seg (db=Seg db_id=seg from=187 to=198)
seg (db=Seg db_id=seg from=257 to=274)
AMDSBA5_34_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1710..2852
DNA (1143bp) protein (381aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16)
Acetyl-CoA acetyltransferase n=1 Tax=Pyrolobus fumarii 1A RepID=G0EGR6_PYRF1 (db=UNIREF evalue=2.3e-42 bit_score=178.7 identity=40.7 coverage=65.87926509186352)
THIOLASE_2 (db=PatternScan db_id=PS00737 from=326 to=342 evalue=0.0 interpro_id=IPR020613 interpro_description=Thiolase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
THIOLASE_3 (db=PatternScan db_id=PS00099 from=361 to=374 evalue=0.0 interpro_id=IPR020610 interpro_description=Thiolase, active site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
AMDSBA5_34_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2912..4393)
DNA (1482bp) protein (494aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U075_9FIRM (db=UNIREF evalue=5.9e-115 bit_score=420.2 identity=45.2 coverage=96.76113360323887)
seg (db=Seg db_id=seg from=451 to=465)
AMDSBA5_34_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4390..4914)
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=G8U074_9FIRM (db=UNIREF evalue=5.0e-61 bit_score=239.6 identity=68.0 coverage=96.57142857142857)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=10 to=165 evalue=3.5e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=78 evalue=1.5e-15 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor
AMDSBA5_34_5
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5003..6208)
DNA (1206bp) protein (402aa)
arabinose ABC transporter permease
Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7A4_PHYPA (db=UNIREF evalue=3.8e-19 bit_score=101.7 identity=45.0 coverage=24.62686567164179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=135 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=372 to=391)
AMDSBA5_34_6
unknown

Not on your lists

6610..7158
DNA (549bp) protein (183aa)
seg (db=Seg db_id=seg from=13 to=24)
LigT-like (db=superfamily db_id=SSF55144 from=35 to=178 evalue=5.6e-13 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
AMDSBA5_34_7
Metallosphaera yellowstonensis, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(7165..7440)
DNA (276bp) protein (92aa)
phhB; pterin-4a-carbinolamine dehydratase PhhB (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase 1 n=7 Tax=Microcystis aeruginosa RepID=I4FBH7_MICAE (db=UNIREF evalue=1.6e-18 bit_score=97.4 identity=47.2 coverage=95.65217391304348)
PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (db=HMMPanther db_id=PTHR12599 from=1 to=90 evalue=3.3e-31 interpro_id=IPR001533 interpro_description=Transcriptional coactivator/pterin dehydratase GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729), Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124))
PCD-like (db=superfamily db_id=SSF55248 from=1 to=91 evalue=3.3e-29 interpro_id=IPR001533 interpro_description=Transcriptional coactivator/pterin dehydratase GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729), Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124))
AMDSBA5_34_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7623..8876
DNA (1254bp) protein (418aa)
major facilitator superfamily protein
Probable major facilitator superfamily transporter n=1 Tax=Leptospirillum rubarum RepID=A3ES61_9BACT (db=UNIREF evalue=1.2e-28 bit_score=133.3 identity=29.8 coverage=90.66985645933015)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
AMDSBA5_34_9
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(8910..9257)
DNA (348bp) protein (116aa)
Transcriptional regulator, ArsR family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CII7_THET1 (db=UNIREF evalue=3.6e-07 bit_score=60.1 identity=39.3 coverage=62.93103448275862)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=12 to=112 evalue=2.6e-20)
no description (db=HMMSmart db_id=SM00418 from=19 to=113 evalue=1.9e-16 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=19 to=109 evalue=1.1e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA5_34_10
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..10203
DNA (819bp) protein (273aa)
Zn-dependent hydrolase
Metallo-beta-lactamase family protein n=29 Tax=pseudomallei group RepID=A5JA81_BURML (db=UNIREF evalue=9.6e-51 bit_score=206.1 identity=44.4 coverage=89.37728937728939)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=2 to=246 evalue=7.1e-52)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=246 evalue=1.3e-49)
AMDSBA5_34_11
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

10200..11450
DNA (1251bp) protein (417aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=318)
transmembrane_regions (db=TMHMM db_id=tmhmm from=378 to=400)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=188)
AMDSBA5_34_12
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

11486..11830
DNA (345bp) protein (115aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I276_SULAT (db=UNIREF evalue=3.5e-10 bit_score=70.1 identity=31.9 coverage=98.26086956521739)
DsrEFH-like (db=superfamily db_id=SSF75169 from=1 to=114 evalue=4.3e-12)
(db=HMMPfam db_id=PF02635 from=11 to=114 evalue=1.6e-08 interpro_id=IPR003787 interpro_description=Sulphur relay, DsrE/F-like protein)
AMDSBA5_34_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11926..13212)
DNA (1287bp) protein (429aa)
transglutaminase domain-containing protein
Transglutaminase domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TTS0_9FIRM (db=UNIREF evalue=6.9e-104 bit_score=383.3 identity=49.5 coverage=90.67599067599068)
seg (db=Seg db_id=seg from=364 to=378)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=182 to=312 evalue=3.1e-28)
AMDSBA5_34_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13486..13824)
DNA (339bp) protein (113aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSN4_9FIRM (db=UNIREF evalue=1.2e-10 bit_score=71.6 identity=35.5 coverage=93.80530973451327)
Uncharacterized protein {ECO:0000313|EMBL:AEW04411.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSN4_SULAD
AMDSBA5_34_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14044..14250
DNA (207bp) protein (69aa)
hypothetical protein
Transmembrane protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I5L4_SULAT (db=UNIREF evalue=9.3e-19 bit_score=97.8 identity=68.3 coverage=89.85507246376811)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
AMDSBA5_34_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14408..15703)
DNA (1296bp) protein (432aa)
codA; cytosine deaminase
codA; cytosine deaminase
Cytosine deaminase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JFI4_9ALTE (db=UNIREF evalue=6.1e-92 bit_score=343.6 identity=43.5 coverage=93.51851851851852)
seg (db=Seg db_id=seg from=125 to=135)
AMDSBA5_34_17
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(15835..17388)
DNA (1554bp) protein (518aa)
Membrane protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQF9_9CHLR (db=UNIREF evalue=2.6e-52 bit_score=212.2 identity=29.8 coverage=93.62934362934364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=304 to=326)
transmembrane_regions (db=TMHMM db_id=tmhmm from=336 to=355)
seg (db=Seg db_id=seg from=99 to=113)
AMDSBA5_34_18
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

17544..18851
DNA (1308bp) protein (436aa)
hypothetical protein
Quinoprotein dehydrogenase n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L2M0_PICTO (db=UNIREF evalue=4.2e-40 bit_score=171.4 identity=33.6 coverage=70.41284403669725)
seg (db=Seg db_id=seg from=81 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA5_34_19
unknown

Not on your lists

18916..19677
DNA (762bp) protein (254aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=105 to=244 evalue=1.7e-11 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
GNAT (db=ProfileScan db_id=PS51186 from=115 to=250 evalue=11.791 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
AMDSBA5_34_20
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19719..20084)
DNA (366bp) protein (122aa)
ahpC; peroxiredoxin
Probable peroxiredoxin 1 n=2 Tax=Brevundimonas sp. BAL3 RepID=B4WBY4_9CAUL (db=UNIREF evalue=1.1e-27 bit_score=128.3 identity=50.4 coverage=94.26229508196722)
PEROXIREDOXIN-RELATED (db=HMMPanther db_id=PTHR10681:SF10 from=2 to=109 evalue=4.1e-49)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=2 to=109 evalue=4.1e-49)
AMDSBA5_34_21
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20217..20366)
DNA (150bp) protein (50aa)
AhpC2; peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin n=2 Tax=Sulfobacillus acidophilus RepID=G8U0N2_9FIRM (db=UNIREF evalue=2.1e-12 bit_score=76.3 identity=78.6 coverage=82.0)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=5 to=49 evalue=3.6e-17 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=8 to=49 evalue=1.0e-16)
AMDSBA5_34_22
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20674..21045
DNA (372bp) protein (124aa)
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase family protein n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4C0C3_PRORE (db=UNIREF evalue=2.1e-08 bit_score=64.3 identity=36.5 coverage=89.51612903225806)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=120 evalue=3.2e-19)
no description (db=Gene3D db_id=G3DSA:3.10.180.10 from=1 to=112 evalue=4.8e-05)
AMDSBA5_34_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21163..22902
DNA (1740bp) protein (580aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=3.0e-203 bit_score=713.8 identity=56.6 coverage=98.9655172413793)
seg (db=Seg db_id=seg from=408 to=422)
seg (db=Seg db_id=seg from=23 to=41)
AMDSBA5_34_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22972..24444)
DNA (1473bp) protein (491aa)
NCS1 nucleoside transporter family
NCS1 nucleoside transporter family
Permease homolog HyuP n=1 Tax=Arthrobacter aurescens RepID=Q9F467_ARTAU (db=UNIREF evalue=1.4e-31 bit_score=143.3 identity=26.5 coverage=80.24439918533605)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
AMDSBA5_34_25
Bacillus sp. OxB-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24658..25542
DNA (885bp) protein (295aa)
proline-specific peptidase
proline-specific peptidase
Proline iminopeptidase n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z071_9EURY (db=UNIREF evalue=2.4e-39 bit_score=168.3 identity=31.5 coverage=88.8135593220339)
Proline-specific peptidase, F1 type (db=HMMPIR db_id=PIRSF005539 from=1 to=292 evalue=3.2e-123 interpro_id=IPR005945 interpro_description=Peptidase S33, tricorn interacting factor 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: cytoplasm (GO:0005737))
AMDSBA5_34_26
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25630..25965)
DNA (336bp) protein (112aa)
transcriptional regulator CdaR
Transcriptional regulator, CdaR n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PDY3_STRVO
Transcriptional regulator, CdaR {ECO:0000313|EMBL:AEM82811.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger
AMDSBA5_34_27
Paenibacillus sp. FSL R5-0912, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25959..26771)
DNA (813bp) protein (271aa)
PucR family transcriptional regulator
Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C179_9CLOT (db=UNIREF evalue=2.0e-08 bit_score=65.5 identity=36.7 coverage=35.05535055350554)
seg (db=Seg db_id=seg from=132 to=146)
seg (db=Seg db_id=seg from=254 to=268)
AMDSBA5_34_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27040..28446
DNA (1407bp) protein (469aa)
metallophosphoesterase
metallophosphoesterase
5'-Nucleotidase domain protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GGR9_METPE (db=UNIREF evalue=9.6e-83 bit_score=313.2 identity=35.7 coverage=98.72068230277186)
Displaying 28 items

View Taxonomy