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AMDSBA5_48

Alias: AMDSBA5_C47

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_48_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(215..928)
DNA (714bp) protein (238aa)
transposase IS3/IS911 family protein
ISSd1, transposase OrfB n=2 Tax=Shigella dysenteriae RepID=B3X7H4_SHIDY (db=UNIREF evalue=5.1e-16 bit_score=90.5 identity=54.9 coverage=29.411764705882355)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=158 to=236 evalue=7.1e-17 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
(db=HMMPfam db_id=PF00665 from=163 to=236 evalue=1.6e-11 interpro_id=IPR001584 interpro_description=Integrase, catalytic core GO=Biological Process: DNA integration (GO:0015074))
AMDSBA5_48_2
Leptospira kirschneri, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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comp(1425..1772)
DNA (348bp) protein (116aa)
1425..1772 - ( gc_cont=0.500)
Uncharacterized protein {ECO:0000313|EMBL:EMK21742.1}; TaxID=1240687 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kirschneri serovar Bulgarica str.
AMDSBA5_48_3
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1863..3032
DNA (1170bp) protein (390aa)
Type I restriction-modification system,DNA-methyltransferase subunit M (EC:2.1.1.72)
Type I restriction-modification system,DNA-methyltransferase subunit M (EC:2.1.1.72)
Type I restriction-modification system, M subunit n=1 Tax=Ruegeria sp. R11 RepID=B7QXB1_9RHOB (db=UNIREF evalue=6.2e-160 bit_score=569.3 identity=74.6 coverage=97.94871794871794)
AMDSBA5_48_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3029..4135
DNA (1107bp) protein (369aa)
restriction endonuclease subunit S
Type-1 restriction enzyme EcoR124II specificity protein n=2 Tax=Escherichia coli RepID=T1S1_ECOLX (db=UNIREF evalue=1.4e-41 bit_score=176.0 identity=48.8 coverage=52.84552845528455)
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=181 to=362 evalue=7.2e-36)
(db=HMMPfam db_id=PF01420 from=188 to=344 evalue=4.3e-31 interpro_id=IPR000055 interpro_description=Restriction endonuclease, type I, HsdS GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA modification (GO:0006304))
AMDSBA5_48_5
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4137..5321
DNA (1185bp) protein (395aa)
prrC; anticodon nuclease
prrC; anticodon nuclease
Anticodon nuclease PrrC n=1 Tax=Vibrio splendidus 12B01 RepID=A3UPJ7_VIBSP (db=UNIREF evalue=2.7e-118 bit_score=431.0 identity=56.4 coverage=91.89873417721519)
AMDSBA5_48_6
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5396..8497
DNA (3102bp) protein (1034aa)
hsdR; Type I site-specific deoxyribonuclease, HsdR family
hsdR; Type I site-specific deoxyribonuclease, HsdR family
Type-1 restriction enzyme R protein n=179 Tax=Staphylococcus aureus RepID=HSDR_STAAC (db=UNIREF evalue=3.4e-141 bit_score=508.4 identity=36.4 coverage=89.65183752417795)
seg (db=Seg db_id=seg from=762 to=772)
AMDSBA5_48_7
unknown

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8954..10528
DNA (1575bp) protein (525aa)
seg (db=Seg db_id=seg from=340 to=357)
AMDSBA5_48_8
unknown

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10851..11153
DNA (303bp) protein (101aa)
10851..11153 + ( gc_cont=0.528)
AMDSBA5_48_9
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11496..12443
DNA (948bp) protein (316aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RZ98_SEROD (db=UNIREF evalue=1.7e-54 bit_score=218.8 identity=41.4 coverage=94.9367088607595)
seg (db=Seg db_id=seg from=287 to=298)
hypothetical protein Tax=GWA2_Desulfovibrionales_65_9_curated
AMDSBA5_48_10
unknown

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12664..12951
DNA (288bp) protein (96aa)
12664..12951 + ( gc_cont=0.514)
AMDSBA5_48_11
unknown

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13568..13732
DNA (165bp) protein (55aa)
13568..13732 + ( gc_cont=0.430)
AMDSBA5_48_12
unknown

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comp(13837..14271)
DNA (435bp) protein (145aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA5_48_13
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14969..15553
DNA (585bp) protein (195aa)
resolvase
Resolvase domain-containing protein n=1 Tax=Pseudomonas sp. K-62 RepID=I2FG08_9PSED (db=UNIREF evalue=3.2e-40 bit_score=170.6 identity=49.7 coverage=93.33333333333333)
seg (db=Seg db_id=seg from=125 to=142)
RECOMBINASES_1 (db=PatternScan db_id=PS00397 from=5 to=13 evalue=0.0 interpro_id=IPR006118 interpro_description=Recombinase, conserved site GO=Molecular Function: recombinase activity (GO:0000150), Biological Process: DNA recombination (GO:0006310))
AMDSBA5_48_14
unknown

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comp(16050..16169)
DNA (120bp) protein (40aa)
16050..16169 - ( gc_cont=0.458)
Displaying 14 items

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