ggKbase home page

AMDSBA5_158

Alias: AMDSBA5_C192

Search features with annotation key words

Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_158_1
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1..360
-----------------
DNA (360bp)
protein (120aa)
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=5 to=102 evalue=9.1e-19 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: re
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=4 to=100 evalue=5.8e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
(db=HMMPfam db_id=PF00486 from=26 to=99 evalue=3.4e-13 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00862 from=25 to=100 evalue=2.8e-12 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA5_158_2
unknown

Not on your lists

444..857
-----------------
DNA (414bp)
protein (138aa)
444..857 + ( gc_cont=0.527)
AMDSBA5_158_3
unknown

Not on your lists

comp(1007..1285)
-----------------
DNA (279bp)
protein (93aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA5_158_4
unknown

Not on your lists

1393..1686
-----------------
DNA (294bp)
protein (98aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
Displaying 4 items

View Taxonomy