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AMDSBAU_2

Alias: SULFO_OTHER_2

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Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_2_1
unknown

Not on your lists

comp(1..1323)
-----------------
DNA (1323bp)
protein (441aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=278)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=251)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=163 to=185)
AMDSBAU_2_2
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1381..2535)
-----------------
DNA (1155bp)
protein (385aa)
DNA primase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D7_9FIRM
DNA primase, catalytic core (EC:2.7.7.-)
seg (db=Seg db_id=seg from=2 to=20)
seg (db=Seg db_id=seg from=106 to=125)
AMDSBAU_2_3
unknown

Not on your lists

comp(3236..3970)
-----------------
DNA (735bp)
protein (245aa)
3236..3970 - ( gc_cont=0.732)
AMDSBAU_2_4
unknown

Not on your lists

comp(3954..5399)
-----------------
DNA (1446bp)
protein (482aa)
seg (db=Seg db_id=seg from=175 to=188)
seg (db=Seg db_id=seg from=13 to=33)
AMDSBAU_2_5
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5434..7377)
-----------------
DNA (1944bp)
protein (648aa)
TRAG family protein n=4 Tax=Thermoanaerobacteraceae RepID=F1ZW89_THEET (db=UNIREF evalue=2.1e-92 bit_score=345.9 identity=39.3 coverage=74.69135802469135)
TRAG family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=281 to=301)
AMDSBAU_2_6
unknown

Not on your lists

comp(7370..7576)
-----------------
DNA (207bp)
protein (69aa)
seg (db=Seg db_id=seg from=2 to=20)
AMDSBAU_2_7
unknown

Not on your lists

comp(7527..7724)
-----------------
DNA (198bp)
protein (66aa)
7527..7724 - ( gc_cont=0.697)
AMDSBAU_2_8
unknown

Not on your lists

comp(7724..7987)
-----------------
DNA (264bp)
protein (88aa)
7724..7987 - ( gc_cont=0.705)
AMDSBAU_2_9
unknown

Not on your lists

comp(8016..9836)
-----------------
DNA (1821bp)
protein (607aa)
seg (db=Seg db_id=seg from=575 to=591)
seg (db=Seg db_id=seg from=474 to=486)
seg (db=Seg db_id=seg from=461 to=469)
AMDSBAU_2_10
Waddlia chondrophila, Waddlia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(9931..11649)
-----------------
DNA (1719bp)
protein (573aa)
putative helicase
Putative helicase n=1 Tax=Waddlia chondrophila WSU 86-1044 RepID=D6YX19_WADCW (db=UNIREF evalue=2.3e-74 bit_score=285.8 identity=33.7 coverage=88.8307155322862)
seg (db=Seg db_id=seg from=477 to=487)
seg (db=Seg db_id=seg from=11 to=31)
AMDSBAU_2_11
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11667..13205)
-----------------
DNA (1539bp)
protein (513aa)
Putative lytic transglycosylase n=1 Tax=Sulfobacillus thermotolerans RepID=G5CJ16_9FIRM (db=UNIREF evalue=8.3e-100 bit_score=370.2 identity=44.8 coverage=94.73684210526315)
lytic transglycosylase
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=415 to=429)
AMDSBAU_2_12
unknown

Not on your lists

comp(13198..13935)
-----------------
DNA (738bp)
protein (246aa)
seg (db=Seg db_id=seg from=40 to=51)
AMDSBAU_2_13
unknown

Not on your lists

comp(13947..14441)
-----------------
DNA (495bp)
protein (165aa)
seg (db=Seg db_id=seg from=14 to=39)
AMDSBAU_2_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15326..15961
-----------------
DNA (636bp)
protein (212aa)
Uncharacterized protein, putative amidase n=1 Tax=Frankia sp. QA3 RepID=I9A370_9ACTO (db=UNIREF evalue=4.0e-40 bit_score=170.6 identity=46.3 coverage=93.86792452830188)
putative creatinine amidohydrolase
seg (db=Seg db_id=seg from=187 to=205)
seg (db=Seg db_id=seg from=147 to=161)
AMDSBAU_2_15
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15958..16662
-----------------
DNA (705bp)
protein (235aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Frankia sp. EuI1c RepID=E3IX27_FRASU (db=UNIREF evalue=1.6e-13 bit_score=82.4 identity=28.1 coverage=96.17021276595744)
no description (db=HMMSmart db_id=SM00866 from=87 to=225 evalue=0.0026 interpro_id=IPR011663 interpro_description=UbiC transcription regulator-associated GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00392 from=8 to=61 evalue=1.5e-11 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_2_16
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16731..17447
-----------------
DNA (717bp)
protein (239aa)
nuclease-like protein
NERD domain protein n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NI13_ROSCS (db=UNIREF evalue=1.5e-19 bit_score=102.4 identity=27.0 coverage=95.81589958158996)
seg (db=Seg db_id=seg from=173 to=185)
(db=HMMPfam db_id=PF08378 from=67 to=188 evalue=8.5e-19 interpro_id=IPR011528 interpro_description=NERD)
AMDSBAU_2_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17444..18421
-----------------
DNA (978bp)
protein (326aa)
IS605 OrfB family transposase
Transposase, IS605 OrfB family n=13 Tax=Methanohalobium evestigatum Z-7303 RepID=D7E5S0_METEZ (db=UNIREF evalue=4.0e-71 bit_score=274.2 identity=41.8 coverage=95.70552147239265)
coiled-coil (db=Coil db_id=coil from=230 to=251 evalue=NA)
seg (db=Seg db_id=seg from=206 to=220)
AMDSBAU_2_18
unknown

Not on your lists

18418..18546
-----------------
DNA (129bp)
protein (43aa)
18418..18546 + ( gc_cont=0.519)
AMDSBAU_2_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18561..19013
-----------------
DNA (453bp)
protein (151aa)
transposase (IS4 family protein)
Transposase (IS4 family protein) n=2 Tax=Sulfobacillus acidophilus RepID=F8I4S2_SULAT (db=UNIREF evalue=1.2e-25 bit_score=122.1 identity=59.0 coverage=68.87417218543047)
AMDSBAU_2_20
Corynebacterium striatum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19184..20194
-----------------
DNA (1011bp)
protein (337aa)
Tyrosine recombinase XerD n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CMC3_CORST
xerC; integrase/recombinase XerC
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=144 to=327 evalue=1.0e-42 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
(db=HMMPfam db_id=PF00589 from=148 to=320 evalue=3.5e-36 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_2_21
unknown

Not on your lists

20198..20806
-----------------
DNA (609bp)
protein (203aa)
20198..20806 + ( gc_cont=0.570)
AMDSBAU_2_22
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(21290..22447)
-----------------
DNA (1158bp)
protein (386aa)
ParB-like partition protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7ABJ3_THEAQ (db=UNIREF evalue=2.9e-20 bit_score=105.5 identity=39.8 coverage=41.968911917098445)
chromosome segregation DNA-binding protein
KorB DNA-binding domain-like (db=superfamily db_id=SSF109709 from=191 to=309 evalue=1.7e-14)
(db=HMMPfam db_id=PF02195 from=110 to=186 evalue=2.0e-12 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_2_23
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22420..23226)
-----------------
DNA (807bp)
protein (269aa)
ParA-like protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIX7_9FIRM (db=UNIREF evalue=2.5e-39 bit_score=168.3 identity=40.5 coverage=94.79553903345726)
chromosome partitioning ATPase
(db=HMMPfam db_id=PF01656 from=6 to=226 evalue=1.5e-26 interpro_id=IPR002586 interpro_description=Cobyrinic acid a,c-diamide synthase)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=257 evalue=1.0e-30)
AMDSBAU_2_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(23219..23407)
-----------------
DNA (189bp)
protein (63aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=4 to=52 evalue=2.7e-13 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=3 to=57 evalue=3.2e-11 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBAU_2_25
unknown

Not on your lists

comp(23517..24671)
-----------------
DNA (1155bp)
protein (385aa)
coiled-coil (db=Coil db_id=coil from=295 to=316 evalue=NA)
seg (db=Seg db_id=seg from=279 to=296)
seg (db=Seg db_id=seg from=303 to=315)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=19 to=87 evalue=5.4e-06)
AMDSBAU_2_26
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25644..27209
-----------------
DNA (1566bp)
protein (522aa)
HNH endonuclease
HNH endonuclease domain protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J9G9_ACIF2 (db=UNIREF evalue=2.6e-157 bit_score=561.2 identity=75.5 coverage=69.15708812260536)
seg (db=Seg db_id=seg from=466 to=483)
seg (db=Seg db_id=seg from=20 to=31)
AMDSBAU_2_27
unknown

Not on your lists

28247..28984
-----------------
DNA (738bp)
protein (246aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
AMDSBAU_2_28
unknown

Not on your lists

comp(29398..29979)
-----------------
DNA (582bp)
protein (194aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=168 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=169 to=186)
seg (db=Seg db_id=seg from=18 to=32)
AMDSBAU_2_29
Lysinibacillus odysseyi, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30404..31012
-----------------
DNA (609bp)
protein (203aa)
TetR family transcriptional regulator
Transcriptional regulator, TetR family n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZLG2_PAEAL (db=UNIREF evalue=3.6e-22 bit_score=110.9 identity=32.5 coverage=94.08866995073892)
seg (db=Seg db_id=seg from=7 to=25)
HTHTETR (db=FPrintScan db_id=PR00455 from=40 to=63 evalue=1.1e-07 interpro_id=IPR023773 interpro_description=Transcription regulator HTH, TetR-type)
AMDSBAU_2_30
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31076..32557
-----------------
DNA (1482bp)
protein (494aa)
major facilitator superfamily protein
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J8N6_FRASU
Major facilitator superfamily MFS_1 n=1 Tax=Frankia sp. EuI1c RepID=E3J8N6_FRASU (db=UNIREF evalue=8.1e-84 bit_score=317.0 identity=42.0 coverage=86.8421052631579)
Displaying items 1-30 of 69 in total

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