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AMDSBAU_2

Alias: SULFO_OTHER_2

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_2_1
unknown

Not on your lists

comp(1..1323)
DNA (1323bp) protein (441aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=278)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=251)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=163 to=185)
AMDSBAU_2_2
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1381..2535)
DNA (1155bp) protein (385aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262898 species="Bacteria; Firmicutes;
DNA primase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D7_9FIRM
DNA primase, catalytic core (EC:2.7.7.-)
seg (db=Seg db_id=seg from=2 to=20)
AMDSBAU_2_3
unknown

Not on your lists

comp(3236..3970)
DNA (735bp) protein (245aa)
3236..3970 - ( gc_cont=0.732)
AMDSBAU_2_4
unknown

Not on your lists

comp(3954..5399)
DNA (1446bp) protein (482aa)
seg (db=Seg db_id=seg from=175 to=188)
seg (db=Seg db_id=seg from=13 to=33)
AMDSBAU_2_5
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5434..7377)
DNA (1944bp) protein (648aa)
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67123.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
TRAG family protein n=4 Tax=Thermoanaerobacteraceae RepID=F1ZW89_THEET (db=UNIREF evalue=2.1e-92 bit_score=345.9 identity=39.3 coverage=74.69135802469135)
TRAG family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_2_6
unknown

Not on your lists

comp(7370..7576)
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=2 to=20)
AMDSBAU_2_7
unknown

Not on your lists

comp(7527..7724)
DNA (198bp) protein (66aa)
7527..7724 - ( gc_cont=0.697)
AMDSBAU_2_8
unknown

Not on your lists

comp(7724..7987)
DNA (264bp) protein (88aa)
7724..7987 - ( gc_cont=0.705)
AMDSBAU_2_9
unknown

Not on your lists

comp(8016..9836)
DNA (1821bp) protein (607aa)
seg (db=Seg db_id=seg from=575 to=591)
seg (db=Seg db_id=seg from=474 to=486)
seg (db=Seg db_id=seg from=461 to=469)
AMDSBAU_2_10
Waddlia chondrophila, Waddlia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(9931..11649)
DNA (1719bp) protein (573aa)
putative helicase
Putative helicase {ECO:0000313|EMBL:ADI39325.1}; TaxID=716544 species="Bacteria; Chlamydiae; Chlamydiales; Waddliaceae; Waddlia.;" source="Waddlia chondrophila (strain ATCC VR-1470 / WSU 86-1044).;"
Putative helicase n=1 Tax=Waddlia chondrophila WSU 86-1044 RepID=D6YX19_WADCW (db=UNIREF evalue=2.3e-74 bit_score=285.8 identity=33.7 coverage=88.8307155322862)
seg (db=Seg db_id=seg from=477 to=487)
AMDSBAU_2_11
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11667..13205)
DNA (1539bp) protein (513aa)
Putative lytic transglycosylase {ECO:0000313|EMBL:AEP14293.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source
Putative lytic transglycosylase n=1 Tax=Sulfobacillus thermotolerans RepID=G5CJ16_9FIRM (db=UNIREF evalue=8.3e-100 bit_score=370.2 identity=44.8 coverage=94.73684210526315)
lytic transglycosylase
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_2_12
unknown

Not on your lists

comp(13198..13935)
DNA (738bp) protein (246aa)
seg (db=Seg db_id=seg from=40 to=51)
AMDSBAU_2_13
unknown

Not on your lists

comp(13947..14441)
DNA (495bp) protein (165aa)
seg (db=Seg db_id=seg from=14 to=39)
AMDSBAU_2_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15326..15961
DNA (636bp) protein (212aa)
Uncharacterized protein, putative amidase {ECO:0000313|EMBL:EIV93871.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
Uncharacterized protein, putative amidase n=1 Tax=Frankia sp. QA3 RepID=I9A370_9ACTO (db=UNIREF evalue=4.0e-40 bit_score=170.6 identity=46.3 coverage=93.86792452830188)
putative creatinine amidohydrolase
seg (db=Seg db_id=seg from=187 to=205)
AMDSBAU_2_15
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15958..16662
DNA (705bp) protein (235aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Frankia sp. EuI1c RepID=E3IX27_FRASU (db=UNIREF evalue=1.6e-13 bit_score=82.4 identity=28.1 coverage=96.17021276595744)
Transcriptional regulator {ECO:0000313|EMBL:EIE97355.1}; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K6
no description (db=HMMSmart db_id=SM00866 from=87 to=225 evalue=0.0026 interpro_id=IPR011663 interpro_description=UbiC transcription regulator-associated GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_2_16
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16731..17447
DNA (717bp) protein (239aa)
nuclease-like protein
Nuclease-like protein {ECO:0000313|EMBL:AHM57681.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953
NERD domain protein n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NI13_ROSCS (db=UNIREF evalue=1.5e-19 bit_score=102.4 identity=27.0 coverage=95.81589958158996)
seg (db=Seg db_id=seg from=173 to=185)
AMDSBAU_2_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17444..18421
DNA (978bp) protein (326aa)
IS605 OrfB family transposase
Transposase, IS605 OrfB family {ECO:0000313|EMBL:ADI74247.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanoha
Transposase, IS605 OrfB family n=13 Tax=Methanohalobium evestigatum Z-7303 RepID=D7E5S0_METEZ (db=UNIREF evalue=4.0e-71 bit_score=274.2 identity=41.8 coverage=95.70552147239265)
coiled-coil (db=Coil db_id=coil from=230 to=251 evalue=NA)
AMDSBAU_2_18
unknown

Not on your lists

18418..18546
DNA (129bp) protein (43aa)
18418..18546 + ( gc_cont=0.519)
AMDSBAU_2_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18561..19013
DNA (453bp) protein (151aa)
transposase (IS4 family protein)
Transposase (IS4 family protein) {ECO:0000313|EMBL:AEJ40919.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" sour
Transposase (IS4 family protein) n=2 Tax=Sulfobacillus acidophilus RepID=F8I4S2_SULAT (db=UNIREF evalue=1.2e-25 bit_score=122.1 identity=59.0 coverage=68.87417218543047)
AMDSBAU_2_20
Corynebacterium striatum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19184..20194
DNA (1011bp) protein (337aa)
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=525268 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium striatum
Tyrosine recombinase XerD n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CMC3_CORST
xerC; integrase/recombinase XerC
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=144 to=327 evalue=1.0e-42 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_2_21
unknown

Not on your lists

20198..20806
DNA (609bp) protein (203aa)
20198..20806 + ( gc_cont=0.570)
AMDSBAU_2_22
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(21290..22447)
DNA (1158bp) protein (386aa)
ParB-like partition protein {ECO:0000313|EMBL:EED09155.1}; TaxID=498848 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus aquaticus Y51MC23.;"
ParB-like partition protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7ABJ3_THEAQ (db=UNIREF evalue=2.9e-20 bit_score=105.5 identity=39.8 coverage=41.968911917098445)
chromosome segregation DNA-binding protein
KorB DNA-binding domain-like (db=superfamily db_id=SSF109709 from=191 to=309 evalue=1.7e-14)
AMDSBAU_2_23
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22420..23226)
DNA (807bp) protein (269aa)
ParA-like protein {ECO:0000313|EMBL:AEP14254.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillu
ParA-like protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIX7_9FIRM (db=UNIREF evalue=2.5e-39 bit_score=168.3 identity=40.5 coverage=94.79553903345726)
chromosome partitioning ATPase
(db=HMMPfam db_id=PF01656 from=6 to=226 evalue=1.5e-26 interpro_id=IPR002586 interpro_description=Cobyrinic acid a,c-diamide synthase)
AMDSBAU_2_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(23219..23407)
DNA (189bp) protein (63aa)
Tax=RBG_16_Acidobacteria_64_8_curated
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=4 to=52 evalue=2.7e-13 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=3 to=57 evalue=3.2e-11 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBAU_2_25
unknown

Not on your lists

comp(23517..24671)
DNA (1155bp) protein (385aa)
coiled-coil (db=Coil db_id=coil from=295 to=316 evalue=NA)
seg (db=Seg db_id=seg from=279 to=296)
seg (db=Seg db_id=seg from=303 to=315)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=19 to=87 evalue=5.4e-06)
AMDSBAU_2_26
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25644..27209
DNA (1566bp) protein (522aa)
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:AIA55715.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithioba
HNH endonuclease domain protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J9G9_ACIF2 (db=UNIREF evalue=2.6e-157 bit_score=561.2 identity=75.5 coverage=69.15708812260536)
seg (db=Seg db_id=seg from=466 to=483)
AMDSBAU_2_27
unknown

Not on your lists

28247..28984
DNA (738bp) protein (246aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
AMDSBAU_2_28
unknown

Not on your lists

comp(29398..29979)
DNA (582bp) protein (194aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=168 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=169 to=186)
seg (db=Seg db_id=seg from=18 to=32)
AMDSBAU_2_29
Lysinibacillus odysseyi, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30404..31012
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KGR84928.1}; TaxID=1220589 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus odysseyi 34hs-1 = NBRC 10
TetR family transcriptional regulator
Transcriptional regulator, TetR family n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZLG2_PAEAL (db=UNIREF evalue=3.6e-22 bit_score=110.9 identity=32.5 coverage=94.08866995073892)
seg (db=Seg db_id=seg from=7 to=25)
AMDSBAU_2_30
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31076..32557
DNA (1482bp) protein (494aa)
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCH79653.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-
major facilitator superfamily protein
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J8N6_FRASU
Displaying items 1-30 of 69 in total

View Taxonomy