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AMDSBAU_6

Alias: SULFO_OTHER_6

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Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_6_1
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..679
-----------------
DNA (678bp)
protein (226aa)
Phage protein Gp37/Gp68 n=2 Tax=Leptospira santarosai RepID=M6X746_9LEPT
Gp37Gp68 family protein
(db=HMMPfam db_id=PF07505 from=71 to=214 evalue=2.9e-39 interpro_id=IPR011101 interpro_description=Burkholderia phage phiE125, Gp37)
AMDSBAU_6_2
unknown

Not on your lists

1009..3090
-----------------
DNA (2082bp)
protein (694aa)
coiled-coil (db=Coil db_id=coil from=219 to=240 evalue=NA)
seg (db=Seg db_id=seg from=362 to=378)
seg (db=Seg db_id=seg from=587 to=612)
AMDSBAU_6_3
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3145..4014)
-----------------
DNA (870bp)
protein (290aa)
Site-specific recombinase XerD n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WR22_9CYAN
integrase
seg (db=Seg db_id=seg from=232 to=252)
seg (db=Seg db_id=seg from=114 to=125)
AMDSBAU_6_4
unknown

Not on your lists

4141..4827
-----------------
DNA (687bp)
protein (229aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=195 to=217)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
AMDSBAU_6_5
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5256..6011
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Pseudomonas RepID=B7XGK3_PSEPU
seg (db=Seg db_id=seg from=145 to=156)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=111 to=184 evalue=0.00072)
AMDSBAU_6_6
unknown

Not on your lists

6137..6409
-----------------
DNA (273bp)
protein (91aa)
coiled-coil (db=Coil db_id=coil from=11 to=32 evalue=NA)
AMDSBAU_6_7
unknown

Not on your lists

6619..7020
-----------------
DNA (402bp)
protein (134aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBAU_6_8
unknown

Not on your lists

comp(7051..7251)
-----------------
DNA (201bp)
protein (67aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBAU_6_9
unknown

Not on your lists

7327..8100
-----------------
DNA (774bp)
protein (258aa)
7327..8100 + ( gc_cont=0.602)
AMDSBAU_6_10
unknown

Not on your lists

8200..8934
-----------------
DNA (735bp)
protein (245aa)
seg (db=Seg db_id=seg from=21 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
AMDSBAU_6_11
unknown

Not on your lists

8946..9485
-----------------
DNA (540bp)
protein (180aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=109 to=117)
AMDSBAU_6_12
unknown

Not on your lists

9511..9627
-----------------
DNA (117bp)
protein (39aa)
seg (db=Seg db_id=seg from=1 to=17)
seg (db=Seg db_id=seg from=22 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBAU_6_13
unknown

Not on your lists

9867..10082
-----------------
DNA (216bp)
protein (72aa)
9867..10082 + ( gc_cont=0.569)
AMDSBAU_6_14
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10226..10747
-----------------
DNA (522bp)
protein (174aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sinorhizobium RepID=K0P1P1_RHIML (db=UNIREF evalue=9.0e-38 bit_score=162.5 identity=50.9 coverage=92.52873563218391)
seg (db=Seg db_id=seg from=130 to=144)
(db=HMMPfam db_id=PF07799 from=26 to=156 evalue=1.1e-45 interpro_id=IPR012441 interpro_description=Bacteriophage D3, Orf41.6)
AMDSBAU_6_15
unknown

Not on your lists

10752..10946
-----------------
DNA (195bp)
protein (65aa)
10752..10946 + ( gc_cont=0.518)
AMDSBAU_6_16
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

10936..12213
-----------------
DNA (1278bp)
protein (426aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CJ85_9FIRM (db=UNIREF evalue=2.6e-83 bit_score=315.1 identity=46.6 coverage=81.92488262910797)
phospholipase D/Transphosphatidylase
seg (db=Seg db_id=seg from=280 to=286)
seg (db=Seg db_id=seg from=7 to=17)
AMDSBAU_6_17
unknown

Not on your lists

12531..14384
-----------------
DNA (1854bp)
protein (618aa)
seg (db=Seg db_id=seg from=90 to=101)
seg (db=Seg db_id=seg from=62 to=72)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=18 to=151 evalue=2.8e-08 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
(db=HMMPfam db_id=PF02518 from=24 to=109 evalue=8.7e-06 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
AMDSBAU_6_18
Jeotgalibacillus sp. D5, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14448..14987
-----------------
DNA (540bp)
protein (180aa)
hypothetical protein
Uncharacterized protein n=3 Tax=Clostridium botulinum RepID=B1INN2_CLOBK
AMDSBAU_6_19
unknown

Not on your lists

15129..15443
-----------------
DNA (315bp)
protein (105aa)
15129..15443 + ( gc_cont=0.533)
AMDSBAU_6_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15521..16171
-----------------
DNA (651bp)
protein (217aa)
cell wall hydrolase SleB
Cell wall hydrolase SleB n=2 Tax=Sulfobacillus acidophilus RepID=G8U084_SULAD (db=UNIREF evalue=3.3e-21 bit_score=107.8 identity=51.3 coverage=51.1520737327189)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
seg (db=Seg db_id=seg from=92 to=109)
AMDSBAU_6_21
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16228..16878
-----------------
DNA (651bp)
protein (217aa)
DNA adenine methylase (EC:2.1.1.72)
DNA adenine methylase n=3 Tax=Acinetobacter baumannii RepID=K1KZ26_ACIBA (db=UNIREF evalue=1.1e-29 bit_score=136.0 identity=41.9 coverage=71.88940092165899)
seg (db=Seg db_id=seg from=69 to=80)
no description (db=Gene3D db_id=G3DSA:1.10.1020.10 from=91 to=197 evalue=1.1e-22 interpro_id=IPR023095 interpro_description=Adenine-specific methyltransferase, domain 2 GO=Molecular Function: site-specific DNA-methyltransferase (adenine-specific) activity (GO:0009007))
AMDSBAU_6_22
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

17173..17643
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J9F3_NOSP7
AMDSBAU_6_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17739..19151
-----------------
DNA (1413bp)
protein (471aa)
ftsK; cell division protein FtsK
Cell division protein FtsK/SpoIIIE n=2 Tax=Sulfobacillus acidophilus RepID=F8I6H6_SULAT (db=UNIREF evalue=1.7e-62 bit_score=246.1 identity=36.3 coverage=98.08917197452229)
seg (db=Seg db_id=seg from=43 to=49)
seg (db=Seg db_id=seg from=301 to=313)
AMDSBAU_6_24
unknown

Not on your lists

19240..19785
-----------------
DNA (546bp)
protein (182aa)
19240..19785 + ( gc_cont=0.548)
AMDSBAU_6_25
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19782..20672
-----------------
DNA (891bp)
protein (297aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HI01_ARTCA
seg (db=Seg db_id=seg from=163 to=174)
AMDSBAU_6_26
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

20753..21667
-----------------
DNA (915bp)
protein (305aa)
RpoD family RNA polymerase sigma factor
RNA polymerase sigma factor RpoD n=8 Tax=Thermotoga RepID=RPOD_THEMA
SIGMA70_2 (db=PatternScan db_id=PS00716 from=261 to=287 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=198 to=293 evalue=1.1e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct
AMDSBAU_6_27
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21698..22399
-----------------
DNA (702bp)
protein (234aa)
serine/threonine protein phosphatase
Serine/threonine protein phosphatase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EF31_THECK
seg (db=Seg db_id=seg from=48 to=58)
PROTEIN PHOSPHATASE 2C (db=HMMPanther db_id=PTHR13832 from=99 to=139 evalue=0.00046 interpro_id=IPR015655 interpro_description=Protein phosphatase 2C)
AMDSBAU_6_28
unknown

Not on your lists

comp(22581..22841)
-----------------
DNA (261bp)
protein (87aa)
22581..22841 - ( gc_cont=0.621)
AMDSBAU_6_29
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22890..22994
-----------------
DNA (105bp)
protein (35aa)
22890..22994 + ( gc_cont=0.514)
AMDSBAU_6_30
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22972..24636
-----------------
DNA (1665bp)
protein (555aa)
pPPM1a_288; hypothetical protein rbh
pPPM1a_288; hypothetical protein rbh
Putative uncharacterized protein pPPM1a_288 n=1 Tax=Paenibacillus polymyxa M1 RepID=G0W2C4_PAEPO
Putative uncharacterized protein pPPM1a_288 n=1 Tax=Paenibacillus polymyxa M1 RepID=G0W2C4_PAEPO (db=UNIREF evalue=8.8e-204 bit_score=715.7 identity=67.6 coverage=92.61261261261261)
Displaying items 1-30 of 53 in total

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