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AMDSBAU_42

Alias: SULFO_OTHER_42

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_42_1
unknown

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1..69
-----------------
DNA (69bp)
protein (23aa)
1..69 + ( gc_cont=0.638)
AMDSBAU_42_2
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(880..1263)
-----------------
DNA (384bp)
protein (128aa)
membrane protein
drug/metabolite exporter family protein, partial n=1 Tax=Sporolactobacillus inulinus CASD RepID=UPI000255BC63 (db=UNIREF evalue=4.3e-29 bit_score=133.3 identity=52.6 coverage=88.28125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
AMDSBAU_42_3
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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1370..1804
-----------------
DNA (435bp)
protein (145aa)
IS4-like transposase
IS4-like transposase n=2 Tax=Thermacetogenium phaeum DSM 12270 RepID=K4LI75_9THEO (db=UNIREF evalue=3.2e-12 bit_score=77.4 identity=36.9 coverage=75.17241379310344)
AMDSBAU_42_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1804..3072
-----------------
DNA (1269bp)
protein (423aa)
transposase IS4 family protein
IS4 family transposase n=1 Tax=Sulfobacillus acidophilus (strain TPY) RepID=F8IA42_SULAT
seg (db=Seg db_id=seg from=324 to=346)
AMDSBAU_42_5
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3050..3643)
-----------------
DNA (594bp)
protein (198aa)
eamA-like transporter family protein
drug/metabolite exporter family protein, partial n=1 Tax=Sporolactobacillus inulinus CASD RepID=UPI000255BC63
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=57)
AMDSBAU_42_6
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

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comp(4064..4384)
-----------------
DNA (321bp)
protein (107aa)
Putative uncharacterized protein n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PWL3_9BACT (db=UNIREF evalue=3.7e-10 bit_score=70.1 identity=39.2 coverage=88.78504672897196)
AMDSBAU_42_7
unknown

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comp(4408..4530)
-----------------
DNA (123bp)
protein (41aa)
seg (db=Seg db_id=seg from=2 to=13)
AMDSBAU_42_8
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4876..5676)
-----------------
DNA (801bp)
protein (267aa)
Methyltransferase type 11 n=1 Tax=Paenibacillus lactis 154 RepID=G4HBV9_9BACL
Methyltransferase type 11 n=1 Tax=Paenibacillus lactis 154 RepID=G4HBV9_9BACL (db=UNIREF evalue=3.1e-98 bit_score=364.0 identity=66.2 coverage=98.87640449438202)
type 11 methyltransferase rbh
type 11 methyltransferase rbh
AMDSBAU_42_9
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5673..6095)
-----------------
DNA (423bp)
protein (141aa)
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSS9_ALIAD (db=UNIREF evalue=7.0e-33 bit_score=146.0 identity=62.4 coverage=80.85106382978722)
HTH_ARSR_1 (db=PatternScan db_id=PS00846 from=48 to=66 evalue=0.0 interpro_id=IPR018334 interpro_description=Transcription regulator ArsR, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=7 to=113 evalue=1.8e-12 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBAU_42_10
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6628..7428
-----------------
DNA (801bp)
protein (267aa)
GGDEF domain protein
GGDEF domain protein n=2 Tax=Desulfovibrio magneticus RepID=C4XMQ0_DESMR (db=UNIREF evalue=2.3e-24 bit_score=118.6 identity=33.5 coverage=80.14981273408239)
(db=HMMPfam db_id=PF00563 from=12 to=222 evalue=1.9e-25 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
EAL domain-like (db=superfamily db_id=SSF141868 from=7 to=222 evalue=3.0e-31 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBAU_42_11
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7658..10048
-----------------
DNA (2391bp)
protein (797aa)
GGDEF domain-containing protein
Diguanylate cyclase and metal dependent phosphohydrolase n=6 Tax=Clostridium thermocellum RepID=A3DBP1_CLOTH
transmembrane_regions (db=TMHMM db_id=tmhmm from=195 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBAU_42_12
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11228..11884
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum 20Z RepID=G4T422_META2 (db=UNIREF evalue=2.4e-24 bit_score=118.2 identity=35.1 coverage=99.08675799086758)
AMDSBAU_42_13
unknown

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comp(12423..12554)
-----------------
DNA (132bp)
protein (44aa)
12423..12554 - ( gc_cont=0.561)
AMDSBAU_42_14
bacterium UASB14, Bacteria

Not on your lists

comp(12551..12877)
-----------------
DNA (327bp)
protein (109aa)
Transposase n=1 Tax=uncultured archaeon GZfos19A5 RepID=Q64D30_9ARCH (db=UNIREF evalue=7.4e-14 bit_score=82.4 identity=43.4 coverage=93.57798165137615)
transposase
seg (db=Seg db_id=seg from=4 to=15)
AMDSBAU_42_15
unknown

Not on your lists

comp(13114..13431)
-----------------
DNA (318bp)
protein (106aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=5.0)
AMDSBAU_42_16
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13549..14370)
-----------------
DNA (822bp)
protein (274aa)
RNA polymerase sigma 70
RNA polymerase sigma factor n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GGH2_9FIRM (db=UNIREF evalue=6.3e-62 bit_score=243.4 identity=56.3 coverage=81.02189781021897)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
SIGMA70_2 (db=PatternScan db_id=PS00716 from=239 to=265 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBAU_42_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14790..15563)
-----------------
DNA (774bp)
protein (258aa)
mutY; A/G-specific adenine glycosylase
mutY; A/G-specific adenine glycosylase
A/G-specific adenine glycosylase n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L3_SULAT
A/G-specific adenine glycosylase n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L3_SULAT (db=UNIREF evalue=5.9e-86 bit_score=323.2 identity=61.3 coverage=92.24806201550388)
AMDSBAU_42_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15655..16803)
-----------------
DNA (1149bp)
protein (383aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L5_SULAT
seg (db=Seg db_id=seg from=164 to=169)
AMDSBAU_42_19
unknown

Not on your lists

comp(16778..16894)
-----------------
DNA (117bp)
protein (39aa)
16778..16894 - ( gc_cont=0.504)
AMDSBAU_42_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16956..17993)
-----------------
DNA (1038bp)
protein (346aa)
aminodeoxychorismate lyase
aminodeoxychorismate lyase
Aminodeoxychorismate lyase n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L6_SULAT
Aminodeoxychorismate lyase n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L6_SULAT (db=UNIREF evalue=1.1e-95 bit_score=355.9 identity=56.7 coverage=93.64161849710982)
AMDSBAU_42_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18024..18749)
-----------------
DNA (726bp)
protein (242aa)
Holliday junction resolvase
Holliday junction resolvase
Holliday junction resolvase n=2 Tax=Sulfobacillus acidophilus RepID=G8TY96_SULAD
Holliday junction resolvase n=2 Tax=Sulfobacillus acidophilus RepID=G8TY96_SULAD (db=UNIREF evalue=3.1e-81 bit_score=307.4 identity=64.7 coverage=98.7603305785124)
AMDSBAU_42_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18768..19034)
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein
UPF0297 protein TPY_3351 n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L8_SULAT (db=UNIREF evalue=1.9e-31 bit_score=140.6 identity=82.4 coverage=94.3820224719101)
seg (db=Seg db_id=seg from=65 to=78)
(db=HMMPfam db_id=PF06135 from=5 to=81 evalue=1.6e-34 interpro_id=IPR009309 interpro_description=Uncharacterised protein family UPF0297)
AMDSBAU_42_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19066..19479)
-----------------
DNA (414bp)
protein (138aa)
Alanine--tRNA ligase n=2 Tax=Sulfobacillus acidophilus RepID=F8I9L9_SULAT (db=UNIREF evalue=3.1e-25 bit_score=120.6 identity=49.3 coverage=98.55072463768117)
alaS; alanyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=35 to=63 evalue=NA)
seg (db=Seg db_id=seg from=4 to=21)
Displaying 23 items

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