| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RNA polymerase sigma 70 | similarity |
KEGG
DB: KEGG |
56.3 | 238.0 | 243 | 5.10e-62 | dmt:DESME_10605 |
| RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium met |
UNIPROT
DB: UniProtKB |
56.3 | 238.0 | 243 | 2.50e-61 | W0ED26_9FIRM | |
| RNA polymerase sigma factor n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GGH2_9FIRM (db=UNIREF evalue=6.3e-62 bit_score=243.4 identity=56.3 coverage=81.02189781021897) | similarity |
UNIREF
DB: UNIREF |
56.0 | 81.0 | 243 | 6.00e+00 | dmt:DESME_10605 |
| transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66) | iprscan |
interpro
DB: TMHMM |
0.0 | 0.0 | 0 | 0.0 | dmt:DESME_10605 |
| SIGMA70_2 (db=PatternScan db_id=PS00716 from=239 to=265 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | dmt:DESME_10605 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=123 to=136 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | dmt:DESME_10605 |
| (db=HMMPfam db_id=PF04542 from=99 to=168 evalue=1.7e-14 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | dmt:DESME_10605 |
| RNA polymerase sporulation-specific sigma factor, SigK/SigE types (db=HMMPIR db_id=PIRSF000770 from=34 to=273 evalue=1.3e-66 interpro_id=IPR016263 interpro_description=RNA polymerase sporulation-specific sigma factor, SigK/SigE GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: sigma factor activity (GO:0016987), Biological Process: sporulation resulting in formation of a cellular spore (GO:0030435)) | iprscan |
interpro
DB: HMMPIR |
0.0 | 0.0 | 0 | 1.00e+00 | dmt:DESME_10605 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=54 to=169 evalue=1.9e-31 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 1.00e+00 | dmt:DESME_10605 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=179 to=269 evalue=3.9e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 3.00e+00 | dmt:DESME_10605 |
| (db=HMMPfam db_id=PF04545 from=219 to=265 evalue=3.1e-14 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 3.00e+00 | dmt:DESME_10605 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=202 to=266 evalue=4.2e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 4.00e+00 | dmt:DESME_10605 |
| spore_sigmaK: RNA polymerase sigma-K fac (db=HMMTigr db_id=TIGR02846 from=50 to=270 evalue=5.5e-117 interpro_id=IPR014209 interpro_description=RNA polymerase sigma-K type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 5.00e+00 | dmt:DESME_10605 |
| sigma70-ECF: RNA polymerase sigma factor (db=HMMTigr db_id=TIGR02937 from=94 to=269 evalue=5.7e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 5.00e+00 | dmt:DESME_10605 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=239 to=254 evalue=8.2e-12 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 8.00e+00 | dmt:DESME_10605 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=220 to=232 evalue=8.2e-12 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 8.00e+00 | dmt:DESME_10605 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=123 to=136 evalue=8.2e-12 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 8.00e+00 | dmt:DESME_10605 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=254 to=265 evalue=8.2e-12 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 8.00e+00 | dmt:DESME_10605 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=80 to=168 evalue=9.8e-26) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 9.00e+00 | dmt:DESME_10605 |
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