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AMDSBAU_19_15

Organism: Sulfo_Unknown_Bin

partial RP 4 / 55 MC: 1 BSCG 5 / 51 ASCG 0 / 38
Location: comp(11305..11877)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 similarity KEGG
DB: KEGG
  • Identity: 34.4
  • Coverage: 183.0
  • Bit_score: 86
  • Evalue 7.20e-15
RNA polymerase, sigma 30 subunit, SigH n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LJG7_9FIRM similarity UNIREF
DB: UNIREF90
  • Identity: 30.6
  • Coverage: null
  • Bit_score: 79
  • Evalue 9.90e-13
(db=HMMPfam db_id=PF04542 from=23 to=84 evalue=1.8e-10 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 0
  • Evalue 1.00e+00

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Taxonomy

Clostridium sp. CAG:354 → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 573
ATGCAACTGGTTGAGAAGGTACGAATCGGAGATAATCTGGCATTTGATGACCTCATGCCATACTTTTCCCCTTGGATCCAAAAGACGATTGGGCGGTGGCACTTACCTGGTGTTGCGTCCGATGATCTATGGCAAGTCGCCTGGATTGGCCTATGGCAAGCCGCGACTCAGTATCAGTCTGACTATGGACTCAATTTCAGGTCTTGGGCCACTAAGGTGATGCGACGTCGCCTGGCCGAGTTTGCGCGTGCTTCCCTGCGTGTCAAGCATCAGATGTTGTCTCTTGCACTTTCCATGGATGTGGCGGACTGGATCGAGCACCCGTTGACGCGGCATACCACGTCTGTAGCGTCTCCTGAGGACAAGATTATCGAAAAGGAAAATGCCTTAGAGCGGGCGAATATCCTGCTAGGCGGTTTATCGGCCTATGAATTAAAAGTCGCACAGCAGATGATTAAGCAAGTACCGTTGAGCGATGCTGCACACCAATTAGGGGTTGGGTACAAATCCTACGACAATGCGGTTCAACGGGTCCGGAGGAAAGCTCGACATTTTGACCGAACACTCATCTAA
PROTEIN sequence
Length: 191
MQLVEKVRIGDNLAFDDLMPYFSPWIQKTIGRWHLPGVASDDLWQVAWIGLWQAATQYQSDYGLNFRSWATKVMRRRLAEFARASLRVKHQMLSLALSMDVADWIEHPLTRHTTSVASPEDKIIEKENALERANILLGGLSAYELKVAQQMIKQVPLSDAAHQLGVGYKSYDNAVQRVRRKARHFDRTLI*