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AMDSBAU_19

Alias: SULFO_OTHER_19

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_19_1
unknown

Not on your lists

2..223
-----------------
DNA (222bp)
protein (74aa)
2..223 + ( gc_cont=0.577)
AMDSBAU_19_2
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(302..952)
-----------------
DNA (651bp)
protein (217aa)
plasmid stability protein
Plasmid stability protein n=2 Tax=Bacillus megaterium (strain ATCC 12872 / QMB1551) RepID=D5E3G6_BACMQ
no description (db=HMMSmart db_id=SM00470 from=125 to=214 evalue=0.00022 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=124 to=207 evalue=4.7e-10 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_19_3
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1040..2056)
-----------------
DNA (1017bp)
protein (339aa)
Tyrosine recombinase XerC n=1 Tax=Desmospora sp. 8437 RepID=F5SHN0_9BACL
site-specific recombinase XerD
no description (db=Gene3D db_id=G3DSA:1.10.150.130 from=6 to=109 evalue=1.1e-06 interpro_id=IPR023109 interpro_description=Integrase/recombinase, N-terminal)
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=137 to=322 evalue=1.7e-28 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_19_4
unknown

Not on your lists

2223..2951
-----------------
DNA (729bp)
protein (243aa)
seg (db=Seg db_id=seg from=132 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=163)
AMDSBAU_19_5
unknown

Not on your lists

2948..3655
-----------------
DNA (708bp)
protein (236aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=200 to=222)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
AMDSBAU_19_6
unknown

Not on your lists

3807..3971
-----------------
DNA (165bp)
protein (55aa)
3807..3971 + ( gc_cont=0.600)
AMDSBAU_19_7
unknown

Not on your lists

4023..4247
-----------------
DNA (225bp)
protein (75aa)
seg (db=Seg db_id=seg from=4 to=21)
AMDSBAU_19_8
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4244..4606
-----------------
DNA (363bp)
protein (121aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV16_BACTU (db=UNIREF evalue=2.1e-25 bit_score=120.9 identity=49.1 coverage=91.73553719008265)
(db=HMMPfam db_id=PF04266 from=6 to=67 evalue=1.4e-06 interpro_id=IPR007374 interpro_description=ASCH domain)
PUA domain-like (db=superfamily db_id=SSF88697 from=1 to=116 evalue=4.0e-21 interpro_id=IPR015947 interpro_description=PUA-like domain)
AMDSBAU_19_9
unknown

Not on your lists

4652..5092
-----------------
DNA (441bp)
protein (147aa)
4652..5092 + ( gc_cont=0.503)
AMDSBAU_19_10
unknown

Not on your lists

5089..5610
-----------------
DNA (522bp)
protein (174aa)
5089..5610 + ( gc_cont=0.556)
AMDSBAU_19_11
unknown

Not on your lists

comp(5620..5955)
-----------------
DNA (336bp)
protein (112aa)
seg (db=Seg db_id=seg from=6 to=15)
AMDSBAU_19_12

Not on your lists

comp(5972..7606)
-----------------
DNA (1635bp)
protein (545aa)
DNA methylase N-4/N-6 n=1 Tax=mine drainage metagenome RepID=E6QMU1_9ZZZZ
DNA methylase N-4/N-6 n=1 Tax=mine drainage metagenome RepID=E6QMU1_9ZZZZ (db=UNIREF evalue=2.5e-171 bit_score=607.8 identity=54.3 coverage=97.06422018348624)
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain-containing protein
AMDSBAU_19_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7811..10438
-----------------
DNA (2628bp)
protein (876aa)
DNA topoisomerase I
DNA topoisomerase I n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SIB4_THEM7 (db=UNIREF evalue=5.0e-60 bit_score=238.8 identity=28.3 coverage=85.15981735159818)
coiled-coil (db=Coil db_id=coil from=301 to=336 evalue=NA)
coiled-coil (db=Coil db_id=coil from=423 to=444 evalue=NA)
AMDSBAU_19_14
unknown

Not on your lists

10638..11237
-----------------
DNA (600bp)
protein (200aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBAU_19_15
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11305..11877)
-----------------
DNA (573bp)
protein (191aa)
RNA polymerase factor sigma-70
RNA polymerase, sigma 30 subunit, SigH n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LJG7_9FIRM
(db=HMMPfam db_id=PF04542 from=23 to=84 evalue=1.8e-10 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=87 evalue=4.4e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor
AMDSBAU_19_16
unknown

Not on your lists

comp(11936..12184)
-----------------
DNA (249bp)
protein (83aa)
11936..12184 - ( gc_cont=0.558)
AMDSBAU_19_17
Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12184..12993)
-----------------
DNA (810bp)
protein (270aa)
AAA ATPase central domain-containing protein
AAA ATPase central domain protein n=2 Tax=Caldicellulosiruptor RepID=E4QBK1_CALH1 (db=UNIREF evalue=2.6e-20 bit_score=105.1 identity=30.5 coverage=94.07407407407408)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=77 to=239 evalue=1.5e-21)
(db=HMMPfam db_id=PF01695 from=76 to=226 evalue=4.4e-19 interpro_id=IPR002611 interpro_description=IstB-like ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524))
AMDSBAU_19_18
unknown

Not on your lists

comp(12947..13465)
-----------------
DNA (519bp)
protein (173aa)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=109 evalue=0.00037 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=65 evalue=1.1e-07 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_19_19
unknown

Not on your lists

comp(13495..14391)
-----------------
DNA (897bp)
protein (299aa)
13495..14391 - ( gc_cont=0.526)
AMDSBAU_19_20
unknown

Not on your lists

comp(14527..14811)
-----------------
DNA (285bp)
protein (95aa)
seg (db=Seg db_id=seg from=58 to=73)
AMDSBAU_19_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14863..15294)
-----------------
DNA (432bp)
protein (144aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8U002_SULAD
AMDSBAU_19_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15408..16112)
-----------------
DNA (705bp)
protein (235aa)
appr-1-p processing domain-containing protein
Appr-1-p processing domain-containing protein n=1 Tax=Corallococcus coralloides DSM 2259 RepID=H8MJ32_CORCM (db=UNIREF evalue=2.1e-29 bit_score=135.2 identity=47.6 coverage=67.65957446808511)
no description (db=HMMSmart db_id=SM00506 from=59 to=205 evalue=0.00014 interpro_id=IPR002589 interpro_description=Appr-1-p processing)
no description (db=Gene3D db_id=G3DSA:3.40.220.10 from=35 to=209 evalue=1.2e-08)
AMDSBAU_19_23
unknown

Not on your lists

comp(16112..16615)
-----------------
DNA (504bp)
protein (168aa)
seg (db=Seg db_id=seg from=116 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=141)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
AMDSBAU_19_24
unknown

Not on your lists

comp(16666..16809)
-----------------
DNA (144bp)
protein (48aa)
seg (db=Seg db_id=seg from=9 to=22)
AMDSBAU_19_25
unknown

Not on your lists

comp(16860..17237)
-----------------
DNA (378bp)
protein (126aa)
seg (db=Seg db_id=seg from=97 to=111)
seg (db=Seg db_id=seg from=58 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
AMDSBAU_19_26
unknown

Not on your lists

comp(17303..17818)
-----------------
DNA (516bp)
protein (172aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
AMDSBAU_19_27
unknown

Not on your lists

comp(17882..18304)
-----------------
DNA (423bp)
protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
AMDSBAU_19_28
unknown

Not on your lists

comp(18258..18713)
-----------------
DNA (456bp)
protein (152aa)
seg (db=Seg db_id=seg from=125 to=135)
AMDSBAU_19_29
unknown

Not on your lists

comp(19061..19357)
-----------------
DNA (297bp)
protein (99aa)
19061..19357 - ( gc_cont=0.488)
AMDSBAU_19_30
unknown

Not on your lists

comp(19357..19581)
-----------------
DNA (225bp)
protein (75aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
Displaying items 1-30 of 37 in total

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