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AMDSBA2_54

Alias: SULFO_6_54

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA2_54_1
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..581)
DNA (579bp) protein (193aa)
NgoFVII restriction endonuclease.
Uncharacterized protein {ECO:0000313|EMBL:KJS50634.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
NgoFVII restriction endonuclease n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3D9_9FIRM (db=UNIREF evalue=5.3e-23 bit_score=113.6 identity=35.0 coverage=92.74611398963731)
seg (db=Seg db_id=seg from=168 to=177)
AMDSBA2_54_2
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(726..1046)
DNA (321bp) protein (107aa)
DNA binding protein {ECO:0000313|EMBL:KFB66702.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Uncharacterized protein n=1 Tax=Thermoanaerobacterium phage THSA-485A RepID=I3VYU1_9VIRU (db=UNIREF evalue=3.6e-13 bit_score=80.1 identity=39.8 coverage=91.58878504672897)
hypothetical protein
(db=HMMPfam db_id=PF08960 from=1 to=88 evalue=1.0e-12 interpro_id=IPR015055 interpro_description=Acidianus two-tailed virus, Orf117)
AMDSBA2_54_3
unknown

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comp(1160..1573)
DNA (414bp) protein (138aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA2_54_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1604..2242)
DNA (639bp) protein (213aa)
Phage tail assembly-like protein {ECO:0000313|EMBL:AKF10792.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source
appr-1-p processing domain-containing protein
Appr-1-p processing domain-containing protein n=1 Tax=Corallococcus coralloides DSM 2259 RepID=H8MJ32_CORCM (db=UNIREF evalue=1.1e-32 bit_score=146.0 identity=46.2 coverage=83.56807511737088)
seg (db=Seg db_id=seg from=61 to=86)
AMDSBA2_54_5
unknown

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comp(2617..2883)
DNA (267bp) protein (89aa)
2617..2883 - ( gc_cont=0.618)
AMDSBA2_54_6
unknown

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comp(2960..3067)
DNA (108bp) protein (36aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
AMDSBA2_54_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3099..3506)
DNA (408bp) protein (136aa)
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=679936 species="Bacteria; Firmicutes; Clostrid
Single-stranded DNA-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUY0_SULAD (db=UNIREF evalue=9.4e-43 bit_score=178.7 identity=66.7 coverage=94.85294117647058)
(db=HMMPfam db_id=PF00436 from=2 to=103 evalue=1.6e-34 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
AMDSBA2_54_8
unknown

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comp(3594..4025)
DNA (432bp) protein (144aa)
3594..4025 - ( gc_cont=0.486)
AMDSBA2_54_9
unknown

Not on your lists

comp(4148..4546)
DNA (399bp) protein (133aa)
4148..4546 - ( gc_cont=0.544)
AMDSBA2_54_10
unknown

Not on your lists

comp(4610..4852)
DNA (243bp) protein (81aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
AMDSBA2_54_11
unknown

Not on your lists

comp(4960..6120)
DNA (1161bp) protein (387aa)
seg (db=Seg db_id=seg from=34 to=50)
seg (db=Seg db_id=seg from=57 to=68)
AMDSBA2_54_12
unknown

Not on your lists

comp(6104..6874)
DNA (771bp) protein (257aa)
seg (db=Seg db_id=seg from=223 to=234)
seg (db=Seg db_id=seg from=86 to=97)
AMDSBA2_54_13
unknown

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comp(6991..7749)
DNA (759bp) protein (253aa)
seg (db=Seg db_id=seg from=91 to=109)
AMDSBA2_54_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7807..8274)
DNA (468bp) protein (156aa)
seg (db=Seg db_id=seg from=137 to=149)
seg (db=Seg db_id=seg from=72 to=132)
seg (db=Seg db_id=seg from=40 to=57)
seg (db=Seg db_id=seg from=13 to=25)
AMDSBA2_54_15
unknown

Not on your lists

comp(8322..9062)
DNA (741bp) protein (247aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=245)
seg (db=Seg db_id=seg from=94 to=106)
seg (db=Seg db_id=seg from=227 to=246)
AMDSBA2_54_16
unknown

Not on your lists

comp(9188..9448)
DNA (261bp) protein (87aa)
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=7 to=67 evalue=1.9e-08 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=8 to=80 evalue=1.2e-06 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
(db=HMMPfam db_id=PF04545 from=14 to=66 evalue=4.7e-07 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA2_54_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9541..9837)
DNA (297bp) protein (99aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8TV78_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW04718.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA2_54_18
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9877..10599)
DNA (723bp) protein (241aa)
diguanylate cyclase
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=CG_Rhodof_04
Diguanylate cyclase n=2 Tax=Chloroflexus RepID=A9WG22_CHLAA (db=UNIREF evalue=1.7e-07 bit_score=62.4 identity=32.7 coverage=55.601659751037346)
no description (db=HMMSmart db_id=SM00052 from=4 to=228 evalue=0.00058 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA2_54_19
unknown

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comp(10612..10908)
DNA (297bp) protein (99aa)
seg (db=Seg db_id=seg from=44 to=57)
AMDSBA2_54_20
unknown

Not on your lists

comp(10959..11336)
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=68 to=83)
AMDSBA2_54_21
unknown

Not on your lists

11448..11624
DNA (177bp) protein (59aa)
11448..11624 + ( gc_cont=0.435)
AMDSBA2_54_22
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11685..12632)
DNA (948bp) protein (316aa)
StbA-family protein {ECO:0000313|EMBL:AEP14280.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacil
StbA-family protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CJ03_9FIRM (db=UNIREF evalue=1.5e-62 bit_score=245.7 identity=42.5 coverage=95.56962025316456)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=155 to=309 evalue=1.3e-19)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=1 to=156 evalue=7.8e-24)
AMDSBA2_54_23
unknown

Not on your lists

comp(12982..13863)
DNA (882bp) protein (294aa)
12982..13863 - ( gc_cont=0.511)
AMDSBA2_54_24
unknown

Not on your lists

comp(13878..14543)
DNA (666bp) protein (222aa)
seg (db=Seg db_id=seg from=98 to=119)
Displaying 24 items

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