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RifSed_csp2_16ft_3_scaffold_2334

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_2334_1
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2..382
DNA (381bp) protein (127aa)
SNARE associated Golgi protein-like protein Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWF6_METFV
hypothetical protein
SNARE associated Golgi protein-like protein {ECO:0000313|EMBL:ADP77921.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 /; V24 S).;"
RifSed_csp2_16ft_3_scaffold_2334_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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414..941
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S663_CALKI
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2334_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(942..2033)
DNA (1092bp) protein (364aa)
Putative queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NMT2_9FIRM
RifSed_csp2_16ft_3_scaffold_2334_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2037..3041)
DNA (1005bp) protein (335aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000313|EMBL:KCZ70844.1}; EC=2.4.99.17 {ECO:0000313|EMBL:KCZ70844.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CPR9_9CLOT
RifSed_csp2_16ft_3_scaffold_2334_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3065..3844)
DNA (780bp) protein (260aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46EV9_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ72780.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2334_trna_1
unknown

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3892..3965
DNA (74bp)
transferRNA Arg
RifSed_csp2_16ft_3_scaffold_2334_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3973..4179)
DNA (207bp) protein (69aa)
Putative uncharacterized protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12Y36_METBU
Uncharacterized protein {ECO:0000313|EMBL:KCZ72899.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2334_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4265..4843)
DNA (579bp) protein (193aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Non-canonical purine NTP pyrophosphatase Tax=Methanolobus psychrophilus R15 RepID=K4MAS0_9EURY
Ham1-like protein
RifSed_csp2_16ft_3_scaffold_2334_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4830..5264)
DNA (435bp) protein (145aa)
peptidase Tax=Bacillus sp. FJAT-13831 RepID=UPI0002D63D08
Uncharacterized metal-binding protein {ECO:0000313|EMBL:KCZ73356.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2334_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5264..6271)
DNA (1008bp) protein (336aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B21B related cluster Tax=unknown RepID=UPI0003D1B21B
porphobilinogen synthase
RifSed_csp2_16ft_3_scaffold_2334_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6329..7300
DNA (972bp) protein (324aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7452..7661
DNA (210bp) protein (70aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MS84_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7702..8757)
DNA (1056bp) protein (352aa)
tRNA-splicing endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; EC=4.6.1.16 {ECO:0000256|HAMAP-Rule:MF_01834};; tRNA-intron endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tRNA-splicing endonuclease Tax=Methanolobus psychrophilus R15 RepID=K4MA91_9EURY
tRNA intron endonuclease
RifSed_csp2_16ft_3_scaffold_2334_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8760..9119)
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAJ6_METEZ
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2334_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9155..9484
DNA (330bp) protein (110aa)
Protein translation factor SUI1 homolog Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9E3_METMS
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor 1 (eIF-1/SUI1)
RifSed_csp2_16ft_3_scaffold_2334_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(9541..10368)
DNA (828bp) protein (276aa)
mtd; F420-dependent methylenetetrahydromethanopterin dehydrogenase (EC:1.5.99.9)
F420-dependent methylenetetrahydromethanopterin dehydrogenase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=MTD_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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10480..11013
DNA (534bp) protein (178aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11063..11404
DNA (342bp) protein (114aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2334_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11410..11757
DNA (348bp) protein (116aa)
Peptidyl-tRNA hydrolase {ECO:0000313|EMBL:KCZ72578.1}; EC=3.1.1.29 {ECO:0000313|EMBL:KCZ72578.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
aminoacyl-tRNA hydrolase (EC:3.1.1.29)
UPI0003D1AE9B related cluster Tax=unknown RepID=UPI0003D1AE9B
RifSed_csp2_16ft_3_scaffold_2334_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11754..13727)
DNA (1974bp) protein (658aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TMY1_METAC
Uncharacterized protein {ECO:0000313|EMBL:KCZ73155.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2334_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13712..14596)
DNA (885bp) protein (295aa)
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain {ECO:0000313|EMBL:KCZ73154.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KCZ73154.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Serine/threonine protein kinase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468F1_METBF
Serine/threonine protein kinase
RifSed_csp2_16ft_3_scaffold_2334_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14793..15533)
DNA (741bp) protein (247aa)
Metallo-beta-lactamase domain protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WM08_METH6
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:KCZ71490.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Metallo-beta-lactamase domain protein
RifSed_csp2_16ft_3_scaffold_2334_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15505..16815)
DNA (1311bp) protein (437aa)
ATPases of the AAA+ class Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9Q2_METCZ
AAA+ family ATPase {ECO:0000313|EMBL:KCZ71491.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATPase
RifSed_csp2_16ft_3_scaffold_2334_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16957..17502
DNA (546bp) protein (182aa)
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:KCZ71493.1}; EC=1.2.7.1 {ECO:0000313|EMBL:KCZ71493.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pyruvate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.1)
Pyruvate synthase gamma chain Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12U51_METBU
RifSed_csp2_16ft_3_scaffold_2334_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17499..17759
DNA (261bp) protein (87aa)
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:KCZ71494.1}; EC=1.2.7.1 {ECO:0000313|EMBL:KCZ71494.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Pyruvate ferredoxin oxidoreductase, delta subunit Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B9P0_METTP
pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
RifSed_csp2_16ft_3_scaffold_2334_25
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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17756..18943
DNA (1188bp) protein (396aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL36_METZD
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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18940..19812
DNA (873bp) protein (291aa)
2-oxoacid:ferredoxin oxidoreductase, beta subunit Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L2D7_METHD
2-oxoacid:ferredoxin oxidoreductase, beta subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2334_27
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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20113..21822
DNA (1710bp) protein (570aa)
Uncharacterized protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLI5_METH6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH52339.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
RifSed_csp2_16ft_3_scaffold_2334_28
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21822..22280
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Gordonia sp. KTR9 RepID=J9RZP2_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RifSed_csp2_16ft_3_scaffold_2334_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(22647..23372)
DNA (726bp) protein (242aa)
Iron-sulfur flavoprotein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPS0_METAC
iron-sulfur flavoprotein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 31 in total

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