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RifSed_csp2_16ft_3_scaffold_2424

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_2424_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..132
DNA (132bp) protein (44aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2424_2
unknown

Not on your lists

comp(181..528)
DNA (348bp) protein (116aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2424_3
RBG_16_OP11_Woesebacteria_34_12_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

1436..1615
DNA (180bp) protein (60aa)
Tax=RBG_16_OP11_Woesebacteria_34_12_curated
RifSed_csp2_16ft_3_scaffold_2424_4
RBG_16_OP11_Woesebacteria_34_12_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

1725..2015
DNA (291bp) protein (97aa)
UPI0003D1B480 related cluster Tax=unknown RepID=UPI0003D1B480
nucleoid protein MC1
Tax=RBG_16_OP11_Woesebacteria_34_12_curated
RifSed_csp2_16ft_3_scaffold_2424_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2311..2943
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Methanosarcina mazei RepID=Q8PU24_METMA
Putative phosphoesterase, ICC {ECO:0000313|EMBL:KCZ71154.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cacineurin superfamily phosphoesterase
RifSed_csp2_16ft_3_scaffold_2424_6
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2943..3701
DNA (759bp) protein (253aa)
Cobyrinic acid ac-diamide synthase Tax=Methanolobus psychrophilus R15 RepID=K4M8B0_9EURY
Cobyrinic acid ac-diamide synthase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2424_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3704..4378
DNA (675bp) protein (225aa)
DNA repair protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUJ3_METAC
DNA repair and recombination protein RadB {ECO:0000256|HAMAP-Rule:MF_00350}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
radB; DNA repair and recombination protein RadB
RifSed_csp2_16ft_3_scaffold_2424_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4406..5719)
DNA (1314bp) protein (438aa)
Ammonium transporter Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WR03_METH6
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ammonium transporter
RifSed_csp2_16ft_3_scaffold_2424_9
unknown

Not on your lists

comp(6013..6132)
DNA (120bp) protein (40aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2424_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6151..6549)
DNA (399bp) protein (133aa)
UPI0003D1B64B related cluster Tax=unknown RepID=UPI0003D1B64B
Uncharacterized protein {ECO:0000313|EMBL:KCZ71151.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2424_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(6553..8169)
DNA (1617bp) protein (539aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2424_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8372..9502
DNA (1131bp) protein (377aa)
Flagella protein Tax=Methanolobus psychrophilus R15 RepID=K4MF48_9EURY
Putative archaeal flagellar protein D/E {ECO:0000313|EMBL:KCZ71148.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
flagella protein
RifSed_csp2_16ft_3_scaffold_2424_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9504..11123)
DNA (1620bp) protein (540aa)
UPI0003D1AE1F related cluster Tax=unknown RepID=UPI0003D1AE1F
Archaeal flagella assembly protein J {ECO:0000313|EMBL:KCZ71131.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeal flagella assembly protein J
RifSed_csp2_16ft_3_scaffold_2424_14
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11155..12750)
DNA (1596bp) protein (532aa)
ATPase, type IV secretory pathway VirB11 component like protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXM4_METHD
Flagella-related protein FlaI {ECO:0000313|EMBL:AKB86138.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
ATPase, type IV secretory pathway VirB11 component like protein
RifSed_csp2_16ft_3_scaffold_2424_15
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12757..14376)
DNA (1620bp) protein (540aa)
ATPase, type IV secretory pathway VirB11 component like protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXM4_METHD
ATPase, type IV secretory pathway VirB11 component like protein
ATPase, type IV secretory pathway VirB11 component like protein {ECO:0000313|EMBL:AGB48744.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
RifSed_csp2_16ft_3_scaffold_2424_16
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14376..15074)
DNA (699bp) protein (233aa)
AAA ATPase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPX9_METZD
AAA ATPase
AAA ATPase {ECO:0000313|EMBL:AEH61500.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5); (Methanohalophilus zhilinae).;"
RifSed_csp2_16ft_3_scaffold_2424_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(15076..15528)
DNA (453bp) protein (151aa)
Flagellin Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7V5_METEZ
flagellin
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2424_18
unknown

Not on your lists

comp(15541..16398)
DNA (858bp) protein (286aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2424_19
unknown

Not on your lists

comp(16407..16820)
DNA (414bp) protein (138aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2424_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16912..17517)
DNA (606bp) protein (202aa)
Flagellin Tax=Methanolobus psychrophilus R15 RepID=K4M926_9EURY
Flagellin {ECO:0000256|RuleBase:RU361282}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
flagellin
RifSed_csp2_16ft_3_scaffold_2424_21
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17659..18021)
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZK2_METBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE51124.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_2424_22
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18031..18813)
DNA (783bp) protein (261aa)
UPI0003D1AA9B related cluster Tax=unknown RepID=UPI0003D1AA9B
Uncharacterized protein {ECO:0000313|EMBL:ETA66736.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2424_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19017..19427
DNA (411bp) protein (137aa)
Sirohydrochlorin cobaltochelatase {ECO:0000256|HAMAP-Rule:MF_00785}; EC=4.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00785};; CbiXS {ECO:0000256|HAMAP-Rule:MF_00785}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Sirohydrochlorin cobaltochelatase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8C7_METEZ
cobalamin (vitamin B12) biosynthesis protein CbiX
RifSed_csp2_16ft_3_scaffold_2424_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19420..20787
DNA (1368bp) protein (456aa)
UDP-N-acetylmuramoylalanine-D-glutamate ligase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TJZ6_METAC
UDP-N-acetylmuramyl pentapeptide synthase {ECO:0000313|EMBL:KCZ71123.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase
RifSed_csp2_16ft_3_scaffold_2424_25
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20789..21718
DNA (930bp) protein (310aa)
Deoxyhypusine synthase (EC:2.5.1.46)
Probable deoxyhypusine synthase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46GE1_METBF
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2424_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

21774..22364
DNA (591bp) protein (197aa)
Orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMR3_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2424_27
unknown

Not on your lists

comp(22509..22610)
DNA (102bp) protein (34aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2424_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22591..23148)
DNA (558bp) protein (186aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B79AC1
Conserved Archaeal protein (DUF2204) {ECO:0000313|EMBL:KCZ73107.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2424_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23145..23327)
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73108.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_2424_30
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

Not on your lists

23876..24217
DNA (342bp) protein (114aa)
Putative signal transduction protein with CBS domains Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L700_KORCO
signal transduction protein
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ACB08229.1}; species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptofilum (strain OPF8).;"
Displaying 30 items

View Taxonomy