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RifSed_csp2_16ft_3_scaffold_4325

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4325_1
unknown

Not on your lists

2..103
DNA (102bp) protein (34aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4325_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(331..867)
DNA (537bp) protein (179aa)
hypothetical protein Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000376D45F
Hydrogenase maturation factor {ECO:0000313|EMBL:KCZ71229.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
acylphosphatase
RifSed_csp2_16ft_3_scaffold_4325_3
Methanosarcina sp. 2.H.T.1A.15, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1492..2721
DNA (1230bp) protein (410aa)
Putative uncharacterized protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZI3_METBU
Uncharacterized protein {ECO:0000313|EMBL:KKG11621.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.15.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4325_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(2735..3643)
DNA (909bp) protein (303aa)
KaiC Tax=Methanolobus psychrophilus R15 RepID=K4ME93_9EURY
KaiC
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4325_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3974..4921
DNA (948bp) protein (316aa)
Phosphonate ABC transporter, periplasmic phosphonate-binding protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4325_6
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4918..7560
DNA (2643bp) protein (881aa)
hypothetical protein, partial Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B2E38A
PAS/PAC sensor signal transduction histidine kinase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4325_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7553..7930
DNA (378bp) protein (126aa)
Response regulator receiver Tax=Methanolobus psychrophilus R15 RepID=K4MEM9_9EURY
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:KCZ72134.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
response regulator receiver
RifSed_csp2_16ft_3_scaffold_4325_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7966..8565
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MLV6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ72133.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4325_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8647..9576
DNA (930bp) protein (310aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSX2_METAC
Methyltransferase family protein {ECO:0000313|EMBL:KCZ72132.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4325_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9576..10337
DNA (762bp) protein (254aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosomal RNA large subunit methyltransferase E Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RLME_METMA
ftsJ; methyltransferase
RifSed_csp2_16ft_3_scaffold_4325_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10393..10842
DNA (450bp) protein (150aa)
Alkylhydroperoxidase like protein, AhpD family Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKF0_METZD
Alkylhydroperoxidase AhpD family core domain {ECO:0000313|EMBL:KCZ72130.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
alkylhydroperoxidase
RifSed_csp2_16ft_3_scaffold_4325_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(10844..12070)
DNA (1227bp) protein (409aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZX5_METPS
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4325_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12233..12409
DNA (177bp) protein (59aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4325_14
unknown

Not on your lists

comp(12580..12720)
DNA (141bp) protein (47aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4325_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12888..13148
DNA (261bp) protein (87aa)
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase {ECO:0000313|EMBL:KCZ71775.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UbiA prenyltransferase family protein
RifSed_csp2_16ft_3_scaffold_4325_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13105..13887)
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GEL2_METPE
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ71774.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4325_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13900..14928)
DNA (1029bp) protein (343aa)
Putative uncharacterized protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAM1_METMS
Uncharacterized protein {ECO:0000313|EMBL:KCZ71161.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4325_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14967..16154)
DNA (1188bp) protein (396aa)
O-phospho-L-seryl-tRNA:Cys-tRNA synthase {ECO:0000256|HAMAP-Rule:MF_01675}; EC=2.5.1.73 {ECO:0000256|HAMAP-Rule:MF_01675};; Sep-tRNA:Cys-tRNA synthase {ECO:0000256|HAMAP-Rule:MF_01675}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Sep-tRNA:Cys-tRNA synthase (EC:2.5.1.-)
O-phospho-L-seryl-tRNA:Cys-tRNA synthase Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAM2_METMS
RifSed_csp2_16ft_3_scaffold_4325_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16157..16408)
DNA (252bp) protein (84aa)
Redox-active disulfide protein 1 Tax=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) RepID=A9A928_METM6
Alkyl hydroperoxide reductase, large subunit {ECO:0000313|EMBL:KCZ73523.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
redox-active disulfide protein 1
RifSed_csp2_16ft_3_scaffold_4325_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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16469..17002
DNA (534bp) protein (178aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.5.4.13)
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase Tax=Methanosarcina mazei RepID=DUT_METMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4325_trna_1
unknown

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comp(17013..17086)
DNA (74bp)
transferRNA Val
RifSed_csp2_16ft_3_scaffold_4325_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(17186..18082)
DNA (897bp) protein (299aa)
APHP domain-containing protein Tax=Methanolobus psychrophilus R15 RepID=K4MFM7_9EURY
APHP domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 22 items

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