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RifSed_csp2_16ft_3_scaffold_4542

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4542_1
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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comp(2..463)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QG77_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY57863.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
RifSed_csp2_16ft_3_scaffold_4542_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(537..1550)
DNA (1014bp) protein (338aa)
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B400 related cluster Tax=unknown RepID=UPI0003D1B400
flap endonuclease-1
RifSed_csp2_16ft_3_scaffold_4542_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1565..1885)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46D81_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ71214.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4542_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1934..2548)
DNA (615bp) protein (205aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4542_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2666..3172
DNA (507bp) protein (169aa)
Amino acid-binding ACT domain protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQK0_METZD
Putative regulator of amino acid metabolism, contains ACT domain {ECO:0000313|EMBL:KCZ72420.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
amino acid-binding ACT domain-containing protein
RifSed_csp2_16ft_3_scaffold_4542_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3186..4052)
DNA (867bp) protein (289aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPZ6_METZD
Putative acyltransferase {ECO:0000313|EMBL:KCZ72419.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4542_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4143..4316
DNA (174bp) protein (58aa)
Putative RNA-binding protein {ECO:0000313|EMBL:KCZ72418.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4542_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4328..5350
DNA (1023bp) protein (341aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388};; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59 1.2.1.12)
UPI0003D1B3C2 related cluster Tax=unknown RepID=UPI0003D1B3C2
RifSed_csp2_16ft_3_scaffold_4542_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5395..6483
DNA (1089bp) protein (363aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00035FE8E6
Periplasmic component of the Tol biopolymer transport system {ECO:0000313|EMBL:KCZ70858.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Periplasmic component of the Tol biopolymer transport system-like protein precursor
RifSed_csp2_16ft_3_scaffold_4542_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6484..7596)
DNA (1113bp) protein (371aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037A868F
Mg2+/Co2+ transporter {ECO:0000313|EMBL:KCZ70859.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Mg2+ and Co2+ transporter
RifSed_csp2_16ft_3_scaffold_4542_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7666..8436)
DNA (771bp) protein (257aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein Tax=delta proteobacterium NaphS2 RepID=D8FG13_9DELT
Short-chain dehydrogenase {ECO:0000313|EMBL:ETW96229.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
short chain dehydrogenase
RifSed_csp2_16ft_3_scaffold_4542_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8446..9912)
DNA (1467bp) protein (489aa)
Argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=ARLY_METBF
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4542_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9958..10314)
DNA (357bp) protein (119aa)
(SSU ribosomal protein S18P)-alanine acetyltransferase {ECO:0000313|EMBL:KCZ73674.1}; EC=2.3.1.128 {ECO:0000313|EMBL:KCZ73674.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosomal-protein-S18p-alanine acetyltransferase (EC:2.3.1.-)
SSU ribosomal protein S18P alanine acetyltransferase Tax=Methanolobus psychrophilus R15 RepID=K4MDF4_9EURY
RifSed_csp2_16ft_3_scaffold_4542_14
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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10542..12479
DNA (1938bp) protein (646aa)
Putative bacterial type II secretion system protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7N0_UNCMA
gsp-5; putative type II secretion system protein
Putative bacterial type II secretion system protein {ECO:0000313|EMBL:CAJ35613.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
RifSed_csp2_16ft_3_scaffold_4542_15
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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12460..14292
DNA (1833bp) protein (611aa)
Putative bacterial type II secretion system protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7N1_UNCMA
gsp-4; putative type II secretion system protein
Putative bacterial type II secretion system protein {ECO:0000313|EMBL:CAJ35612.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
RifSed_csp2_16ft_3_scaffold_4542_16
unknown

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comp(14295..14618)
DNA (324bp) protein (108aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4542_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14693..15130)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EC26_METEZ
flagellin domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:ADI75148.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303).;"
RifSed_csp2_16ft_3_scaffold_4542_18

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15332..17659
DNA (2328bp) protein (776aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos9D8 RepID=Q647S3_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU84354.1}; species="Archaea; environmental samples.;" source="uncultured archaeon GZfos9D8.;"
hypothetical protein
Displaying 18 items

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