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PLM3-1_170_b2_sep16_scaffold_1170

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1170_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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33..404
DNA (372bp) protein (124aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_2
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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447..1274
DNA (828bp) protein (276aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CWH9_9ARCH
phosphoribosylaminoimidazolesuccinocarboxamide synthase
PLM3-1_170_b2_sep16_scaffold_1170_3
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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1570..2139
DNA (570bp) protein (190aa)
Transcriptional regulator, ArsR family Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CWI0_9ARCH
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EGP93632.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
ArsR family transcriptional regulator
PLM3-1_170_b2_sep16_scaffold_1170_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(2136..2552)
DNA (417bp) protein (139aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2592..3341
DNA (750bp) protein (250aa)
proteasome endopeptidase complex, archaeal, alpha subunit (EC:3.4.25.1)
Proteasome endopeptidase complex, archaeal, alpha subunit {ECO:0000313|EMBL:AIF83899.1}; EC=3.4.25.1 {ECO:0000313|EMBL:AIF83899.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
proteasome subunit alpha (EC:3.4.25.1) bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b2_sep16_scaffold_1170_6
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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3380..4195
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CWK4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EGP93656.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1170_7
unknown

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4227..4334
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1170_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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4423..5415
DNA (993bp) protein (331aa)
50S ribosomal protein L3P Tax=Thaumarchaeota archaeon N4 RepID=V6ASN7_9ARCH
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
rpl3p; 50S ribosomal protein L3P
PLM3-1_170_b2_sep16_scaffold_1170_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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5412..6227
DNA (816bp) protein (272aa)
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rpl; 50S ribosomal protein L4
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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6224..6490
DNA (267bp) protein (89aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
50S ribosomal protein L25
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_11
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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6532..6927
DNA (396bp) protein (132aa)
30S ribosomal protein S19P Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KIT7_9ARCH
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
rps; 30S ribosomal protein S19
PLM3-1_170_b2_sep16_scaffold_1170_12
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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6933..7391
DNA (459bp) protein (153aa)
50S ribosomal protein L22P Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KIT6_9ARCH
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
rpl22p; 50S ribosomal protein L22P
PLM3-1_170_b2_sep16_scaffold_1170_13
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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7435..8166
DNA (732bp) protein (244aa)
30S ribosomal protein S3 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B3U9_9ARCH
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_1170_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8166..8369
DNA (204bp) protein (68aa)
ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribosomal protein L29
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_15
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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8366..8632
DNA (267bp) protein (89aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|HAMAP-Rule:MF_00754}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
Ribonuclease P protein component 1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KIX9_9ARCH
ribonuclease P
PLM3-1_170_b2_sep16_scaffold_1170_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8629..8952
DNA (324bp) protein (108aa)
30S ribosomal protein S17 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
30S ribosomal protein S17
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_17
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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8952..9389
DNA (438bp) protein (146aa)
50S ribosomal protein L14P Tax=Thaumarchaeota archaeon N4 RepID=V6ASK4_9ARCH
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
50S ribosomal protein L14
PLM3-1_170_b2_sep16_scaffold_1170_18
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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9391..9933
DNA (543bp) protein (181aa)
50S ribosomal protein L24P Tax=Thaumarchaeota archaeon N4 RepID=V6ASP6_9ARCH
50S ribosomal protein L24P {ECO:0000313|EMBL:CDI05565.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
KOW domain-containing protein
PLM3-1_170_b2_sep16_scaffold_1170_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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9933..10649
DNA (717bp) protein (239aa)
30S ribosomal protein S4e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
30S ribosomal protein S4e
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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10654..11175
DNA (522bp) protein (174aa)
rpl5p; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rpl; 50S ribosomal protein L5
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1170_21

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11177..11356
DNA (180bp) protein (60aa)
30S ribosomal protein S14 type Z Tax=Cenarchaeum symbiosum (strain A) RepID=A0RVY7_CENSY
ribosomal protein S14
Ribosomal protein S14 (RP-S14, rpsN) {ECO:0000313|EMBL:AIF23951.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_22_C02.;"
PLM3-1_170_b2_sep16_scaffold_1170_22

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11361..11753
DNA (393bp) protein (131aa)
30S ribosomal protein S8P Tax=Thaumarchaeota archaeon N4 RepID=V6ASK8_9ARCH
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_173_D12.;"
rps; 30S ribosomal protein S8
PLM3-1_170_b2_sep16_scaffold_1170_23
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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11743..12300
DNA (558bp) protein (186aa)
50S ribosomal protein L6P Tax=Thaumarchaeota archaeon N4 RepID=V6ASQ1_9ARCH
50S ribosomal protein L6P {ECO:0000313|EMBL:CDI05570.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
rpl; 50S ribosomal protein L6
PLM3-1_170_b2_sep16_scaffold_1170_trna_1
unknown

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12347..12420
DNA (74bp)
transferRNA Asn
PLM3-1_170_b2_sep16_scaffold_1170_24
unknown

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comp(12386..12535)
DNA (150bp) protein (50aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1170_25
unknown

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13134..13994
DNA (861bp) protein (287aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1170_26
unknown

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comp(14238..14378)
DNA (141bp) protein (47aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1170_27
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(14347..14913)
DNA (567bp) protein (189aa)
exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AJW70971.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_1170_28
unknown

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comp(15089..15340)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1170_29
unknown

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comp(15975..16232)
DNA (258bp) protein (86aa)

This feature has no annotations

Displaying items 1-30 of 60 in total

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