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PLM3_30_b1_sep16_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_10_1
unknown

Not on your lists

3..287
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_10_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(619..1911)
DNA (1293bp) protein (431aa)
Putative multicopper oxidase type 3 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ING4_NITGG
multicopper oxidase type 3
Putative multicopper oxidase type 3 {ECO:0000313|EMBL:AFU59329.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_3
unknown

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comp(1954..2064)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_10_4
unknown

Not on your lists

2375..2815
DNA (441bp) protein (147aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_10_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3178..3441)
DNA (264bp) protein (88aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ43_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58172.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_6
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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3692..4747
DNA (1056bp) protein (352aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
Sua5 superfamily-related protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CW62_9ARCH
sua5 superfamily-like protein
PLM3_30_b1_sep16_scaffold_10_7
uncultured crenarchaeote, Crenarchaeota, Archaea

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comp(4749..5369)
DNA (621bp) protein (207aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
bioD; dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD Tax=uncultured crenarchaeote RepID=Q2V9C9_9CREN
PLM3_30_b1_sep16_scaffold_10_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5660..6064
DNA (405bp) protein (135aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFA2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85059.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_10_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6118..6477
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF30_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58385.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6588..7049)
DNA (462bp) protein (154aa)
Putative blue (Type 1) copper domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAN2_NITGG
plastocyanin
Plastocyanin {ECO:0000313|EMBL:AIF85553.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_10_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7190..8800)
DNA (1611bp) protein (537aa)
Putative cytochrome b/b6/petB Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE8_NITGG
petB; putative cytochrome b/b6
Putative cytochrome b/b6 {ECO:0000313|EMBL:AIC14447.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_10_12
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8781..9392)
DNA (612bp) protein (204aa)
rieske iron sulfur protein; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
petC; putative Rieske 2Fe-2S domain cytochrome b6-f complex iron-sulfur subunit
Putative Rieske 2Fe-2S domain cytochrome b6-f complex iron-sulfur subunit {ECO:0000313|EMBL:AIC14448.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_10_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9574..9987)
DNA (414bp) protein (138aa)
Putative thioesterase superfamily protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGU9_NITGG
thioesterase superfamily protein
Putative thioesterase superfamily protein {ECO:0000313|EMBL:AFU57042.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10373..10645
DNA (273bp) protein (91aa)
50S ribosomal protein L44e Tax=Candidatus Nitrososphaera gargensis RepID=K0ILF6_NITGG
LSU ribosomal protein L44E
50S ribosomal protein L44e {ECO:0000256|HAMAP-Rule:MF_01476}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_10_15
unknown

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comp(10727..10840)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_10_16

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comp(10840..11469)
DNA (630bp) protein (210aa)
5-deoxyadenosylcobinamide phosphate nucleotidyltransferase (IspD) {ECO:0000313|EMBL:AIF16544.1}; EC=2.7.7.60 {ECO:0000313|EMBL:AIF16544.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_74_E11.;"
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG3J11 RepID=B3T7V6_9ARCH
5-deoxyadenosylcobinamide phosphate nucleotidyltransferase
PLM3_30_b1_sep16_scaffold_10_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11484..12230)
DNA (747bp) protein (249aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Cobalamin synthase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYQ6_9ARCH
cobS; cobalamin synthase
PLM3_30_b1_sep16_scaffold_10_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12220..13191)
DNA (972bp) protein (324aa)
cobD; cobalamin biosynthesis protein CobD (EC:6.3.1.10)
Probable cobalamin biosynthesis protein CobD Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE05_NITGG
Probable cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13195..14043)
DNA (849bp) protein (283aa)
cobQ; cobyric acid synthase (EC:6.3.5.10)
Probable cobyric acid synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILF9_NITGG
Probable cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14040..15107)
DNA (1068bp) protein (356aa)
Putative aminotransferase class I and II Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBX8_NITGG
aminotransferase class I and II
Putative aminotransferase class I and II {ECO:0000313|EMBL:AFU57055.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

15202..16278
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501}; EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Aspartate-semialdehyde dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I718_NITGG
asd; aspartate-semialdehyde dehydrogenase
PLM3_30_b1_sep16_scaffold_10_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16365..16829
DNA (465bp) protein (155aa)
Putative transcriptional regulator, AsnC family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG5_NITGG
putative transcriptional regulator, AsnC family
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:AIC16701.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_10_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17059..17448)
DNA (390bp) protein (130aa)
Prefoldin subunit beta Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17962..18789)
DNA (828bp) protein (276aa)
ecx1; exosome complex exonuclease (EC:3.1.13.-)
Exosome complex component Rrp42 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHB2_NITGG
Exosome complex component Rrp42 {ECO:0000256|HAMAP-Rule:MF_00622}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18789..19523)
DNA (735bp) protein (245aa)
ecx2; exosome complex exonuclease (EC:3.1.13.-)
Exosome complex component Rrp41 {ECO:0000256|HAMAP-Rule:MF_00591}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00591};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Exosome complex component Rrp41 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID49_NITGG
PLM3_30_b1_sep16_scaffold_10_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19510..20298)
DNA (789bp) protein (263aa)
Exosome complex component Rrp4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL40_NITGG
ecr; exosome complex RNA-binding protein
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(20410..21096)
DNA (687bp) protein (229aa)
Putative ribosome maturation protein SDO1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1
Putative ribosome maturation protein SDO1 {ECO:0000313|EMBL:AFU59313.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21205..22662)
DNA (1458bp) protein (486aa)
Ammonium transporter NrgA Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHJ1_NITGG
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_10_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

23621..24739
DNA (1119bp) protein (373aa)
TPR repeat protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB7_NITGG
hypothetical protein
TPR repeat protein {ECO:0000313|EMBL:AFU59094.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_10_30
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(24783..25082)
DNA (300bp) protein (100aa)
Putative transcriptional regulator, ArsR family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM95_NITGG
arsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AFU60122.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying items 1-30 of 71 in total

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