ggKbase home page

PLM3_30_b1_sep16_scaffold_84

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_84_1
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(2..1612)
DNA (1611bp) protein (537aa)
Putative anaerobic ribonucleoside triphosphate reductase Tax=uncultured crenarchaeote RepID=Q702B4_9CREN
Putative anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:CAF28710.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
anaerobic ribonucleoside-triphosphate reductase
PLM3_30_b1_sep16_scaffold_84_2
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(1710..2309)
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702B3_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28711.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
snf7; SNF7 domain-containing protein
PLM3_30_b1_sep16_scaffold_84_3
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(2496..2882)
DNA (387bp) protein (129aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702B2_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28712.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
nucleic-acid-binding protein
PLM3_30_b1_sep16_scaffold_84_4
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(2898..4055)
DNA (1158bp) protein (386aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Putative acetyl-CoA acetyltransferase Tax=uncultured crenarchaeote RepID=Q702B1_9CREN
Putative acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CAF28713.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_84_5
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

4218..6374
DNA (2157bp) protein (719aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
topA; DNA topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase Tax=uncultured crenarchaeote RepID=Q702B0_9CREN
PLM3_30_b1_sep16_scaffold_84_6
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(6341..7189)
DNA (849bp) protein (283aa)
Putative predicted amidohydrolase Tax=uncultured crenarchaeote RepID=Q702A9_9CREN
Putative predicted amidohydrolase {ECO:0000313|EMBL:CAF28715.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
carbon-nitrogen hydrolase
PLM3_30_b1_sep16_scaffold_84_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(7255..7464)
DNA (210bp) protein (70aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14414.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_84_8
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(7729..8328)
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702A8_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28716.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
putative (P)ppGpp synthetase I, SpoT/RelA
PLM3_30_b1_sep16_scaffold_84_9
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

8442..8801
DNA (360bp) protein (120aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702A7_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28717.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_84_10
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

8953..9366
DNA (414bp) protein (138aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702A6_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28718.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
Sm-like ribonucleoprotein, core
PLM3_30_b1_sep16_scaffold_84_11
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

9369..10913
DNA (1545bp) protein (515aa)
tRNA-guanine(15) transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; EC=2.4.2.48 {ECO:0000256|HAMAP-Rule:MF_01634};; 7-cyano-7-deazaguanine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01634}; Archaeal tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
archaeosine tRNA-ribosyltransferase (EC:2.4.2.29)
tRNA-guanine(15) transglycosylase Tax=uncultured crenarchaeote RepID=Q702A5_9CREN
PLM3_30_b1_sep16_scaffold_84_12
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

11014..11421
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702A4_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28720.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_84_13
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(11472..12839)
DNA (1368bp) protein (456aa)
Putative molybdopterin biosynthesis protein Tax=uncultured crenarchaeote RepID=Q702A3_9CREN
Putative molybdopterin biosynthesis protein {ECO:0000313|EMBL:CAF28721.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
molybdopterin biosynthesis protein MoeB
PLM3_30_b1_sep16_scaffold_84_14
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(12836..14062)
DNA (1227bp) protein (409aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
threonine synthase (EC:4.2.3.1)
Threonine synthase Tax=uncultured crenarchaeote RepID=Q702A2_9CREN
PLM3_30_b1_sep16_scaffold_84_15
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(14231..14584)
DNA (354bp) protein (118aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase Tax=uncultured crenarchaeote RepID=Q702A1_9CREN
PLM3_30_b1_sep16_scaffold_84_16
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(15246..17048)
DNA (1803bp) protein (601aa)
pepF; oligoendopeptidase (EC:3.4.24.-)
Putative oligoendopeptidase F Tax=uncultured crenarchaeote RepID=Q702A0_9CREN
Putative oligoendopeptidase F {ECO:0000313|EMBL:CAF28724.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_84_17
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(17357..18427)
DNA (1071bp) protein (357aa)
dys2; deoxyhypusine synthase (EC:2.5.1.46)
Putative deoxyhypusine synthase Tax=uncultured crenarchaeote RepID=Q701Z9_9CREN
Putative deoxyhypusine synthase {ECO:0000313|EMBL:CAF28725.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_84_18
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(18512..19111)
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q701Z8_9CREN
Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
PLM3_30_b1_sep16_scaffold_84_19
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(19198..19596)
DNA (399bp) protein (133aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q701Z7_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28727.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_84_20
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

19779..20552
DNA (774bp) protein (258aa)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; Short=HPPK {ECO:0000256|HAMAP-Rule:MF_02131};; EC=2.7.6.3 {ECO:0000256|HAMAP-Rule:MF_02131};; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 6-hydroxymethyl-7,8-dihydropterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase Tax=uncultured crenarchaeote RepID=Q701Z6_9CREN
uncharacterized Rossmann fold enzyme
PLM3_30_b1_sep16_scaffold_84_21
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

20658..21332
DNA (675bp) protein (225aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q701Z5_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28729.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_84_22
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

21340..22872
DNA (1533bp) protein (511aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] Tax=uncultured crenarchaeote RepID=Q701Z4_9CREN
PLM3_30_b1_sep16_scaffold_84_23
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(22874..23914)
DNA (1041bp) protein (347aa)
pfkB family carbohydrate kinase (EC:2.7.1.-)
Putative ribokinase Tax=uncultured crenarchaeote RepID=Q701Z3_9CREN
Putative ribokinase {ECO:0000313|EMBL:CAF28731.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_84_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(24038..25753)
DNA (1716bp) protein (572aa)
Archaeal thermosome Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDZ4_NITGG
thermosome subunit
Thermosome subunit {ECO:0000313|EMBL:AIF85157.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_84_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

26067..26954
DNA (888bp) protein (296aa)
ctaB1; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Protoheme IX farnesyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBY9_NITGG
PLM3_30_b1_sep16_scaffold_84_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(26951..27634)
DNA (684bp) protein (228aa)
Ribosomal RNA small subunit methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00554};; 16S rRNA (pseudouridine-N1-)-methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Ribosomal RNA small subunit methyltransferase Nep1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I722_NITGG
ribosome biogenesis protein
PLM3_30_b1_sep16_scaffold_84_27
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

27749..28054
DNA (306bp) protein (102aa)
rnp; Ribonuclease P protein component 4 (EC:3.1.26.5)
Ribonuclease P protein component 4 {ECO:0000256|HAMAP-Rule:MF_00757}; Short=RNase P component 4 {ECO:0000256|HAMAP-Rule:MF_00757};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00757};; Rpp21 {ECO:0000256|HAMAP-Rule:MF_00757}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
Ribonuclease P protein component 4 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BH15_9ARCH
PLM3_30_b1_sep16_scaffold_84_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


28351..28803
DNA (453bp) protein (151aa)
30S ribosomal protein S19e Tax=Candidatus Nitrososphaera gargensis RepID=K0IGX8_NITGG
SSU ribosomal protein S19E
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_84_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

28828..29112
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE27_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57073.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_84_30
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

29646..30695
DNA (1050bp) protein (350aa)
adh4; putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:AIC16707.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AIC16707.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative NAD-dependent alcohol dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH0_NITGG
Displaying items 1-30 of 48 in total

View Taxonomy