ggKbase home page

PLM3_30_b1_sep16_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_143_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2..574
DNA (573bp) protein (191aa)
Cobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; EC=6.3.5.11 {ECO:0000256|HAMAP-Rule:MF_00027};; Cobyrinic acid a,c-diamide synthetase {ECO:0000256|HAMAP-Rule:MF_00027}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Probable cobyrinic acid A,C-diamide synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBT4_NITGG
cobB; cobyrinic acid A,C-diamide synthase
PLM3_30_b1_sep16_scaffold_143_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(676..2055)
DNA (1380bp) protein (460aa)
UDP-glucose/GDP-mannose family dehydrogenase (EC:1.1.1.-)
UDP-glucose/GDP-mannose family dehydrogenase {ECO:0000313|EMBL:AFU59464.1}; EC=1.1.1.- {ECO:0000313|EMBL:AFU59464.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
UDP-glucose/GDP-mannose family dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INJ1_NITGG
PLM3_30_b1_sep16_scaffold_143_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2222..2608)
DNA (387bp) protein (129aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83907.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3_30_b1_sep16_scaffold_143_4
uncultured crenarchaeote 57a5, Crenarchaeota, Archaea

Not on your lists

comp(2753..3280)
DNA (528bp) protein (176aa)
CHRD domain containing protein Tax=uncultured crenarchaeote 57a5 RepID=D4N719_9CREN
CHRD domain containing protein {ECO:0000313|EMBL:ACY24505.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 57a5.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_143_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(3420..4886)
DNA (1467bp) protein (489aa)
glyS; glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000313|EMBL:AFU59469.1}; EC=6.1.1.14 {ECO:0000313|EMBL:AFU59469.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glycine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INJ2_NITGG
PLM3_30_b1_sep16_scaffold_143_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4991..5857)
DNA (867bp) protein (289aa)
nfo; endonuclease 4 (EC:3.1.21.2)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Probable endonuclease 4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB43_NITGG
PLM3_30_b1_sep16_scaffold_143_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5968..6957
DNA (990bp) protein (330aa)
priB; DNA primase, large subunit (EC:2.7.7.-)
DNA primase large subunit PriL Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG0_NITGG
DNA primase large subunit PriL {ECO:0000256|HAMAP-Rule:MF_00701}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6958..8106
DNA (1149bp) protein (383aa)
eukaryotic-type DNA primase, catalytic (small) subunit (EC:2.7.7.-)
DNA primase small subunit PriS {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00011001}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00010998};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
DNA primase small subunit PriS Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN08_NITGG
PLM3_30_b1_sep16_scaffold_143_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8367..8927
DNA (561bp) protein (187aa)
GMP synthase family protein (EC:6.3.5.2)
GMP synthase family protein {ECO:0000313|EMBL:AIF84025.1}; EC=6.3.5.2 {ECO:0000313|EMBL:AIF84025.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative GMP synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB33_NITGG
PLM3_30_b1_sep16_scaffold_143_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8964..9932
DNA (969bp) protein (323aa)
TPR repeat protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFF6_NITGG
hypothetical protein
TPR repeat protein {ECO:0000313|EMBL:AFU58545.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(10041..11210)
DNA (1170bp) protein (390aa)
Putative glycosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIC3_NITGG
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AIC14646.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_143_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11354..11968)
DNA (615bp) protein (205aa)
Protein Ngar_c17860 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN42_NITGG
AMMECR1 domain-containing protein
Protein Ngar_c17860 {ECO:0000256|HAMAP-Rule:MF_00645}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12009..13013)
DNA (1005bp) protein (335aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIY6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59058.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

13124..13510
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59059.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13469..14170)
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGU0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59060.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_trna_2
unknown

Not on your lists

comp(14336..14409)
DNA (74bp)
transferRNA Ala
PLM3_30_b1_sep16_scaffold_143_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

15076..16650
DNA (1575bp) protein (525aa)
Putative radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKN7_NITGG
putative radical SAM domain protein
Putative radical SAM domain protein {ECO:0000313|EMBL:AIC15010.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_143_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(16669..17010)
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIZ5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59068.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17077..17919)
DNA (843bp) protein (281aa)
Putative oxidoreductase FAD/NAD(P)-binding subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB2_NITGG
oxidoreductase FAD/NAD(P)-binding subunit
Putative oxidoreductase FAD/NAD(P)-binding subunit {ECO:0000313|EMBL:AFU59069.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

18055..18348
DNA (294bp) protein (98aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGV8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59085.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18357..19226)
DNA (870bp) protein (290aa)
putative fumarylacetoacetate hydrolase (EC:3.-.-.-)
Putative fumarylacetoacetate hydrolase {ECO:0000313|EMBL:AIC15020.1}; EC=3.-.-.- {ECO:0000313|EMBL:AIC15020.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative fumarylacetoacetate hydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKP8_NITGG
PLM3_30_b1_sep16_scaffold_143_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19232..20977)
DNA (1746bp) protein (582aa)
gltX; glutamate--tRNA ligase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|SAAS:SAAS00088701}; EC=6.1.1.17 {ECO:0000256|SAAS:SAAS00088701};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamate--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ10_NITGG
PLM3_30_b1_sep16_scaffold_143_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20982..21983)
DNA (1002bp) protein (334aa)
gds; geranylgeranyl pyrophosphate synthase (EC:2.5.1.1 2.5.1.10)
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AIC15022.1}; EC=2.5.1.1 {ECO:0000313|EMBL:AIC15022.1};; EC=2.5.1.10 {ECO:0000313|EMBL:AIC15022.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Geranylgeranyl pyrophosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB6_NITGG
PLM3_30_b1_sep16_scaffold_143_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21971..23065)
DNA (1095bp) protein (365aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Isopentenyl-diphosphate delta-isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGW0_NITGG
PLM3_30_b1_sep16_scaffold_143_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(23058..23837)
DNA (780bp) protein (260aa)
Putative aspartate/glutamate/uridylate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICI6_NITGG
aspartate/glutamate/uridylate kinase
Putative aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:AFU59091.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(23888..24874)
DNA (987bp) protein (329aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Mevalonate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGT0_NITGG
PLM3_30_b1_sep16_scaffold_143_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(24871..25713)
DNA (843bp) protein (281aa)
MEMO1 family protein Ngar_c11120 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMN6_NITGG
hypothetical protein
MEMO1 family protein Ngar_c11120 {ECO:0000256|HAMAP-Rule:MF_00055}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_143_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(25710..26438)
DNA (729bp) protein (243aa)
30S ribosomal protein S2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IE52_NITGG
rps2p; 30S ribosomal protein S2p
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_143_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(26440..27687)
DNA (1248bp) protein (416aa)
eno; enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Enolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE56_NITGG
PLM3_30_b1_sep16_scaffold_143_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(27700..27936)
DNA (237bp) protein (79aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase subunit N Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9R1_NITGG
rpoN; DNA-directed RNA polymerase, subunit N
Displaying items 1-30 of 40 in total

View Taxonomy