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PLM3-1_50_b1_sep16_scaffold_218

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_218_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3..314
DNA (312bp) protein (104aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK08_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59563.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_218_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1122..1754
DNA (633bp) protein (211aa)
Phosphoesterase PA-phosphatase related protein Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GV58_9EURY
membrane-associated phospholipid phosphatase
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:AIF84466.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_218_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(1765..2619)
DNA (855bp) protein (285aa)
short-chain dehydrogenase/reductase SDR bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
short-chain dehydrogenase of unknown substrate specificity
Tax=CSP1_1_Thaumarchaeota
PLM3-1_50_b1_sep16_scaffold_218_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2732..3409
DNA (678bp) protein (226aa)
Putative pyridoxamine 5'-phosphate oxidase, FMN-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMU5_NITGG
pyridoxamine 5'-phosphate oxidase, FMN-binding protein
Putative pyridoxamine 5'-phosphate oxidase, FMN-binding protein {ECO:0000313|EMBL:AFU58234.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_218_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3683..4219
DNA (537bp) protein (179aa)
Transcription factor E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDR9_NITGG
tfe; transcription factor E
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_218_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4211..4858)
DNA (648bp) protein (216aa)
ribD; 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:AFU60177.1}; EC=1.1.1.193 {ECO:0000313|EMBL:AFU60177.1};; EC=3.5.4.26 {ECO:0000313|EMBL:AFU60177.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
5-amino-6-(5-phosphoribosylamino)uracil reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMD8_NITGG
PLM3-1_50_b1_sep16_scaffold_218_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4849..6087)
DNA (1239bp) protein (413aa)
Putative amidohydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL67_NITGG
amidohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:AFU60178.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_218_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6078..6866)
DNA (789bp) protein (263aa)
gch3; GTP cyclohydrolase III (EC:3.5.4.29)
GTP cyclohydrolase III {ECO:0000256|HAMAP-Rule:MF_00608}; EC=3.5.4.29 {ECO:0000256|HAMAP-Rule:MF_00608};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
GTP cyclohydrolase III Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INY4_NITGG
PLM3-1_50_b1_sep16_scaffold_218_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6863..7312)
DNA (450bp) protein (150aa)
ribH; riboflavin synthase subunit beta (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJI9_NITGG
PLM3-1_50_b1_sep16_scaffold_218_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7320..8000)
DNA (681bp) protein (227aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; Short=DHBP synthase {ECO:0000256|RuleBase:RU003843};; EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFQ1_NITGG
PLM3-1_50_b1_sep16_scaffold_218_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8057..8686)
DNA (630bp) protein (210aa)
ribE; riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase alpha chain {ECO:0000313|EMBL:AFU60183.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AFU60183.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Riboflavin synthase alpha chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL68_NITGG
PLM3-1_50_b1_sep16_scaffold_218_12
unknown

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comp(8836..8997)
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_218_13
unknown

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comp(8994..9278)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_218_14
CG_Dehalo_01, Dehalococcoidia, Chloroflexi, Bacteria

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comp(9287..11191)
DNA (1905bp) protein (635aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon Gpl RepID=T0LZ53_9EURY
clcB; voltage gated chloride channel
Tax=CG_Dehalo_01
PLM3-1_50_b1_sep16_scaffold_218_15
unknown

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11501..11596
DNA (96bp) protein (32aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_218_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11577..11981
DNA (405bp) protein (135aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KJE2_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16456.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_218_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12023..12274)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFT1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16455.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_218_18
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12441..12695)
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7H2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82324.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_218_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12865..13728)
DNA (864bp) protein (288aa)
citE; citrate/citryl-CoA lyase (EC:4.1.3.6 4.1.3.34)
Putative citrate/ citryl-CoA lyase {ECO:0000313|EMBL:AFU57075.1}; EC=4.1.3.34 {ECO:0000313|EMBL:AFU57075.1};; EC=4.1.3.6 {ECO:0000313|EMBL:AFU57075.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative citrate/ citryl-CoA lyase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBZ8_NITGG
PLM3-1_50_b1_sep16_scaffold_218_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13751..14800)
DNA (1050bp) protein (350aa)
adh4; putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:AIC16707.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AIC16707.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative NAD-dependent alcohol dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILH0_NITGG
PLM3-1_50_b1_sep16_scaffold_218_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15223..15504)
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE27_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57073.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_218_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15527..15979)
DNA (453bp) protein (151aa)
30S ribosomal protein S19e Tax=Candidatus Nitrososphaera gargensis RepID=K0IGX8_NITGG
rps19e; 30S ribosomal protein S19e
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_218_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16676..17347
DNA (672bp) protein (224aa)
Ribosomal RNA small subunit methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00554};; 16S rRNA (pseudouridine-N1-)-methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Ribosomal RNA small subunit methyltransferase Nep1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I722_NITGG
ribosome biogenesis protein
PLM3-1_50_b1_sep16_scaffold_218_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17344..18231)
DNA (888bp) protein (296aa)
ctaB1; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Protoheme IX farnesyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBY9_NITGG
PLM3-1_50_b1_sep16_scaffold_218_25
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18556..20250
DNA (1695bp) protein (565aa)
Archaeal thermosome Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDZ4_NITGG
ths5; archaeal thermosome
Archaeal thermosome {ECO:0000313|EMBL:AIC16689.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_218_26
uncultured crenarchaeote, Crenarchaeota, Archaea

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20365..21405
DNA (1041bp) protein (347aa)
Putative ribokinase Tax=uncultured crenarchaeote RepID=Q701Z3_9CREN
Putative ribokinase {ECO:0000313|EMBL:CAF28731.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
sugar kinase, ribokinase
PLM3-1_50_b1_sep16_scaffold_218_27
uncultured crenarchaeote, Crenarchaeota, Archaea

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comp(21406..22944)
DNA (1539bp) protein (513aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] Tax=uncultured crenarchaeote RepID=Q701Z4_9CREN
PLM3-1_50_b1_sep16_scaffold_218_28
uncultured crenarchaeote, Crenarchaeota, Archaea

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comp(22946..23629)
DNA (684bp) protein (228aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q701Z5_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28729.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_218_29
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(23734..24426)
DNA (693bp) protein (231aa)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; Short=HPPK {ECO:0000256|HAMAP-Rule:MF_02131};; EC=2.7.6.3 {ECO:0000256|HAMAP-Rule:MF_02131};; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 6-hydroxymethyl-7,8-dihydropterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase Tax=uncultured crenarchaeote RepID=Q701Z6_9CREN
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_218_30
uncultured crenarchaeote, Crenarchaeota, Archaea

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24568..24939
DNA (372bp) protein (124aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q701Z7_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28727.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
Displaying items 1-30 of 52 in total

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