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SR-VP_26_10_2019_C_40cm_scaffold_6158

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_6158_1
unknown

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1..240
DNA (240bp) protein (80aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_6158_2
R_OD1_Kaiserbacteria_53_31, Kaiserbacteria, Parcubacteria, Bacteria

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comp(400..1056)
DNA (657bp) protein (219aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_53_31_curated
SR-VP_26_10_2019_C_40cm_scaffold_6158_3
unknown

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comp(1226..1675)
DNA (450bp) protein (150aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_6158_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2154..2510)
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70982.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_6158_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2961..4292)
DNA (1332bp) protein (444aa)
Tetratricopeptide repeat protein {ECO:0000313|EMBL:KCZ72518.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
TPR repeats containing protein
Putative uncharacterized protein id=4174724 bin=GWC2_Deltaproteobacteria_42_51 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
SR-VP_26_10_2019_C_40cm_scaffold_6158_6

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comp(4545..4904)
DNA (360bp) protein (120aa)
Marine sediment metagenome DNA, contig: S12H4_C00522 {ECO:0000313|EMBL:GAI65649.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR-VP_26_10_2019_C_40cm_scaffold_6158_7
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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5120..5299
DNA (180bp) protein (60aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_C_40cm_scaffold_6158_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5452..6456)
DNA (1005bp) protein (335aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable tRNA pseudouridine synthase B n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WMQ1_METH6
putative tRNA pseudouridine synthase B
SR-VP_26_10_2019_C_40cm_scaffold_6158_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6444..6965)
DNA (522bp) protein (174aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054797}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00239};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054803};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00239}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=uncultured archaeon RepID=D1JBZ0_9ARCH
SR-VP_26_10_2019_C_40cm_scaffold_6158_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6966..7835)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD47_9EURY
Putative membrane protein {ECO:0000313|EMBL:KCZ72877.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_6158_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7828..8475)
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=KAD_METBF
SR-VP_26_10_2019_C_40cm_scaffold_6158_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8695..8889
DNA (195bp) protein (65aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_6158_13
unknown

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9183..9419
DNA (237bp) protein (79aa)

This feature has no annotations

Displaying 13 items

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