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CARSLU_2

Alias: CARSLU_6

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSLU_2_1
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2..439)
DNA (438bp) protein (146aa)
UPF0398 protein SLGD_01458 n=2 Tax=Staphylococcus lugdunensis RepID=D3QCU6_STALH (db=UNIREF evalue=1.0e-80 bit_score=301.0 identity=100.0 coverage=99.3150684931507)
hypothetical protein
(db=HMMPfam db_id=PF06908 from=1 to=146 evalue=5.7e-62 interpro_id=IPR024718 interpro_description=Domain of unknown function DUF1273)
UPF0398 protein HMPREF0790_0352 {ECO:0000256|HAMAP-Rule:MF_01575}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
CARSLU_2_2
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(441..782)
DNA (342bp) protein (114aa)
hypothetical protein
YppE-like (db=superfamily db_id=SSF140415 from=1 to=110 evalue=1.3e-22 interpro_id=IPR023351 interpro_description=YppE-like domain)
(db=HMMPfam db_id=PF08807 from=5 to=110 evalue=9.1e-21 interpro_id=IPR014913 interpro_description=Protein of unknown function DUF1798)
PF08807 domain protein n=5 Tax=Staphylococcus lugdunensis RepID=H3WUL5_STALU
CARSLU_2_3
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1751..3871
DNA (2121bp) protein (707aa)
pbp2; penicillin-binding protein 2
pbp2; penicillin-binding protein 2
Multimodular transpeptidase-transglycosylase /Penicillin-binding protein 1A/1B (PBP1) n=3 Tax=Staphylococcus lugdunensis RepID=D3QCU3_STALH (db=UNIREF evalue=0.0 bit_score=1324.0 identity=100.0 coverage=95.3323903818953)
seg (db=Seg db_id=seg from=667 to=699)
CARSLU_2_4
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3961..4293)
DNA (333bp) protein (111aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFU84916.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8NDR0_STALU
CARSLU_2_5
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4300..4959)
DNA (660bp) protein (220aa)
Endonuclease III n=2 Tax=Staphylococcus lugdunensis RepID=D3QCU1_STALH (db=UNIREF evalue=9.0e-127 bit_score=456.0 identity=100.0 coverage=99.0909090909091)
Endonuclease III (EC:4.2.99.18)
Endonuclease III (EC:4.2.99.18)
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=189 to=205 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
CARSLU_2_6
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4949..5395)
DNA (447bp) protein (149aa)
hypothetical protein
Chromosome replication initiation protein dnaD n=2 Tax=Staphylococcus lugdunensis RepID=D3QCU0_STALH (db=UNIREF evalue=1.0e-68 bit_score=261.0 identity=98.65 coverage=98.6577181208054)
seg (db=Seg db_id=seg from=21 to=38)
(db=HMMPfam db_id=PF07261 from=45 to=118 evalue=8.3e-27 interpro_id=IPR006343 interpro_description=Replication protein, DnaD/DnaB domain)
CARSLU_2_7
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5851..6156)
DNA (306bp) protein (102aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22)
seg (db=Seg db_id=seg from=30 to=42)
ASPARTYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594:SF6 from=1 to=101 evalue=2.4e-42 interpro_id=IPR004522 interpro_description=Asparaginyl-tRNA synthetase, class IIb GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: asparagine-tRNA ligase activity (GO:0004816), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421))
ASPARTYL/LYSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594 from=1 to=101 evalue=2.4e-42 interpro_id=IPR018150 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
CARSLU_2_8
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7308..7523)
DNA (216bp) protein (72aa)
DinG family ATP-dependent helicase YoaA n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT8_STALH (db=UNIREF evalue=7.0e-31 bit_score=136.0 identity=100.0 coverage=88.8888888888889)
hypothetical protein
Putative DnaQ family exonuclease/DinG family helicase {ECO:0000313|EMBL:EFU84912.1}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunens
CARSLU_2_9
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10021..10410)
DNA (390bp) protein (130aa)
Biotin-protein ligase/Biotin operon repressor n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT7_STALH (db=UNIREF evalue=6.0e-71 bit_score=269.0 identity=100.0 coverage=98.4615384615385)
birA; BirA bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase synthetase
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=1 to=82 evalue=1.7e-12)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=82 evalue=3.2e-08)
CARSLU_2_10
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(11036..12238)
DNA (1203bp) protein (401aa)
papS; poly A polymerase family protein
papS; poly A polymerase family protein
CCA-adding enzyme n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT6_STALH (db=UNIREF evalue=0.0 bit_score=745.0 identity=99.75 coverage=99.501246882793)
seg (db=Seg db_id=seg from=378 to=390)
CARSLU_2_11
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12251..13369)
DNA (1119bp) protein (373aa)
glycosyl transferase, group 1 family protein rbh
glycosyl transferase, group 1 family protein rbh
Glycosyl transferase, group 1 family protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT5_STALH (db=UNIREF evalue=0.0 bit_score=726.0 identity=100.0 coverage=99.4638069705094)
seg (db=Seg db_id=seg from=154 to=169)
CARSLU_2_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13396..13719)
DNA (324bp) protein (108aa)
MazG nucleotide pyrophosphohydrolase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT4_STALH (db=UNIREF evalue=2.0e-56 bit_score=221.0 identity=100.0 coverage=98.1481481481482)
nucleotide pyrophosphohydrolase
coiled-coil (db=Coil db_id=coil from=30 to=51 evalue=NA)
Predicted pyrophosphohydrolase, MazG-related, YpjD type (db=HMMPIR db_id=PIRSF029904 from=1 to=107 evalue=6.0e-74 interpro_id=IPR012359 interpro_description=NTP pyrophosphohydrolase MazG-related, YpjD)
CARSLU_2_13
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13889..14584)
DNA (696bp) protein (232aa)
metal-dependent peptidase
metal-dependent peptidase
seg (db=Seg db_id=seg from=1 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
CARSLU_2_14
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14630..15226)
DNA (597bp) protein (199aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT2_STALH (db=UNIREF evalue=2.0e-93 bit_score=344.0 identity=98.48 coverage=98.9949748743718)
seg (db=Seg db_id=seg from=9 to=29)
CARSLU_2_15
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15230..15796)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT1_STALH (db=UNIREF evalue=3.0e-104 bit_score=380.0 identity=100.0 coverage=98.9417989417989)
hypothetical protein rbh
hypothetical protein rbh
Uncharacterised conserved protein, UCP007165 type (db=HMMPIR db_id=PIRSF007165 from=1 to=181 evalue=1.8e-28 interpro_id=IPR011188 interpro_description=Uncharacterised protein family UPF0302)
CARSLU_2_16
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15814..16641)
DNA (828bp) protein (276aa)
hypothetical protein
TPR-repeat-containing protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT0_STALH (db=UNIREF evalue=1.0e-148 bit_score=528.0 identity=99.27 coverage=99.2753623188406)
seg (db=Seg db_id=seg from=95 to=105)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083:SF15 from=5 to=264 evalue=9.2e-23)
CARSLU_2_17
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(16587..17072)
DNA (486bp) protein (162aa)
TPR-repeat-containing protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QCT0_STALH (db=UNIREF evalue=2.0e-59 bit_score=231.0 identity=100.0 coverage=69.7530864197531)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=109 to=115 evalue=NA)
seg (db=Seg db_id=seg from=114 to=131)
CARSLU_2_18
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17076..17780)
DNA (705bp) protein (235aa)
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCS9_STALH (db=UNIREF evalue=2.0e-131 bit_score=471.0 identity=100.0 coverage=99.1489361702128)
5-Enolpyruvylshikimate-3-phosphate synthase AroF (EC:2.5.1.19)
EPSP_SYNTHASE_2 (db=PatternScan db_id=PS00885 from=143 to=161 evalue=0.0 interpro_id=IPR023193 interpro_description=3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)
no description (db=Gene3D db_id=G3DSA:3.65.10.10 from=18 to=229 evalue=5.9e-61 interpro_id=IPR001986 interpro_description=Enolpyruvate transferase domain GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
CARSLU_2_19
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18429..19493)
DNA (1065bp) protein (355aa)
3-dehydroquinate synthase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCS8_STALH (db=UNIREF evalue=0.0 bit_score=721.0 identity=99.72 coverage=99.4366197183099)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase (EC:4.2.3.4)
aroB: 3-dehydroquinate synthase (db=HMMTigr db_id=TIGR01357 from=12 to=346 evalue=5.3e-126 interpro_id=IPR016037 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Cellular Component: cytoplasm (GO:0005737), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
CARSLU_2_20
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21120..21644)
DNA (525bp) protein (175aa)
Nucleoside diphosphate kinase n=1 Tax=Staphylococcus lugdunensis M23590 RepID=E6M7F7_STALU (db=UNIREF evalue=1.0e-97 bit_score=358.0 identity=99.43 coverage=98.8571428571429)
ndk; putative nucleoside diphosphate kinase
ndk; putative nucleoside diphosphate kinase
NDP_KINASES (db=PatternScan db_id=PS00469 from=137 to=145 evalue=0.0 interpro_id=IPR023005 interpro_description=Nucleoside diphosphate kinase, active site)
CARSLU_2_21
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(21712..22065)
DNA (354bp) protein (118aa)
Heptaprenyl diphosphate synthase component II n=2 Tax=Staphylococcus lugdunensis RepID=D3QCS5_STALH (db=UNIREF evalue=1.0e-61 bit_score=238.0 identity=98.29 coverage=98.3050847457627)
putative heptaprenyl diphosphate synthase component II
HEPTAPRENYL DIPHOSPHATE SYNTHASE COMPONENT II (db=HMMPanther db_id=PTHR12001:SF16 from=1 to=115 evalue=6.1e-35)
GERANYLGERANYL PYROPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR12001 from=1 to=115 evalue=6.1e-35 interpro_id=IPR017446 interpro_description=Polyprenyl synthetase-related)
CARSLU_2_22
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22717..23442)
DNA (726bp) protein (242aa)
Demethylmenaquinone methyltransferase n=4 Tax=Staphylococcus RepID=D3QCS4_STALH (db=UNIREF evalue=1.0e-141 bit_score=505.0 identity=100.0 coverage=99.1735537190083)
menH; putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC:2.1.1.-) rbh
menH; putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC:2.1.1.-) rbh
UBIE_1 (db=PatternScan db_id=PS01183 from=22 to=37 evalue=0.0 interpro_id=IPR023576 interpro_description=UbiE/COQ5 methyltransferase, conserved site GO=Molecular Function: methyltransferase activity (GO:0008168))
CARSLU_2_23
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23455..24021)
DNA (567bp) protein (189aa)
Putative component A of hexaprenyl diphosphate synthase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCS3_STALH (db=UNIREF evalue=5.0e-103 bit_score=376.0 identity=100.0 coverage=98.9417989417989)
hypothetical protein rbh
hypothetical protein rbh
Uncharacterized protein n=5 Tax=Staphylococcus lugdunensis RepID=K8N9J3_STALU
CARSLU_2_24
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24297..24569)
DNA (273bp) protein (91aa)
hup; DNA-binding protein HU
DNA-binding protein HU n=104 Tax=Staphylococcus RepID=DBH_STAAC (db=UNIREF evalue=8.0e-42 bit_score=172.0 identity=95.56 coverage=97.8021978021978)
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=6.0e-51 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
CARSLU_2_25
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24739..25737)
DNA (999bp) protein (333aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=2 Tax=Staphylococcus lugdunensis RepID=D3QCS1_STALH (db=UNIREF evalue=0.0 bit_score=680.0 identity=99.7 coverage=99.3993993993994)
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
NAD_G3PDH (db=PatternScan db_id=PS00957 from=189 to=210 evalue=0.0 interpro_id=IPR006168 interpro_description=Glycerol-3-phosphate dehydrogenase, NAD-dependent GO=Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367), Biological Process: glycerol-3-phosphate metabolic process (GO:0006072), Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_2_26
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25755..26150)
DNA (396bp) protein (132aa)
GTP-binding protein EngA
GTPase Der n=102 Tax=Staphylococcus RepID=DER_STAA1 (db=UNIREF evalue=3.0e-68 bit_score=260.0 identity=93.89 coverage=98.4848484848485)
MSS1/TRME-RELATED GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR11649 from=1 to=131 evalue=5.3e-55)
GTP-BINDING PROTEIN ENGA (db=HMMPanther db_id=PTHR11649:SF5 from=1 to=131 evalue=5.3e-55 interpro_id=IPR016484 interpro_description=GTP-binding protein EngA GO=Molecular Function: GTP binding (GO:0005525))
CARSLU_2_27
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26131..27069)
DNA (939bp) protein (313aa)
putative GTPase
GTPase Der n=102 Tax=Staphylococcus RepID=DER_STAA1 (db=UNIREF evalue=7.0e-130 bit_score=467.0 identity=93.52 coverage=93.2907348242811)
seg (db=Seg db_id=seg from=145 to=157)
seg (db=Seg db_id=seg from=289 to=306)
CARSLU_2_28
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(27243..28421)
DNA (1179bp) protein (393aa)
putative 30S ribosomal protein S1
putative 30S ribosomal protein S1
30S ribosomal protein S1 n=19 Tax=Staphylococcus RepID=RS1_STAEQ (db=UNIREF evalue=3.0e-177 bit_score=625.0 identity=88.01 coverage=99.4910941475827)
seg (db=Seg db_id=seg from=22 to=33)
CARSLU_2_29
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28704..29363)
DNA (660bp) protein (220aa)
Cytidylate kinase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCR8_STALH (db=UNIREF evalue=1.0e-122 bit_score=442.0 identity=100.0 coverage=99.0909090909091)
Cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase (EC:2.7.4.14)
cmk: cytidylate kinase (db=HMMTigr db_id=TIGR00017 from=2 to=215 evalue=2.3e-83 interpro_id=IPR003136 interpro_description=Cytidylate kinase GO=Molecular Function: cytidylate kinase activity (GO:0004127), Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase-containing compound metabolic process (GO:0006139))
CARSLU_2_30
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29440..30408
DNA (969bp) protein (323aa)
L-asparaginase n=2 Tax=Staphylococcus lugdunensis RepID=D3QCR7_STALH (db=UNIREF evalue=0.0 bit_score=653.0 identity=99.38 coverage=99.3808049535604)
putative L-asparaginase (EC:3.5.1.1) rbh
putative L-asparaginase (EC:3.5.1.1) rbh
ASN_GLN_ASE_1 (db=PatternScan db_id=PS00144 from=6 to=14 evalue=0.0 interpro_id=IPR020827 interpro_description=Asparaginase/glutaminase, conserved site GO=Biological Process: cellular amino acid metabolic process (GO:0006520))
Displaying items 1-30 of 79 in total

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