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CARPEP_2

Alias: CARPEP_16

Search features with annotation key words

Displaying items 1-30 of 334 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARPEP_2_1
Eremococcus coleocola, Eremococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(498..1415)
DNA (918bp) protein (306aa)
LysR family transcriptional regulator
seg (db=Seg db_id=seg from=65 to=85)
seg (db=Seg db_id=seg from=154 to=165)
(db=HMMPfam db_id=PF00126 from=3 to=63 evalue=2.5e-14 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CARPEP_2_2
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1549..2220
DNA (672bp) protein (224aa)
butyrate--acetoacetate CoA-transferase subunit A
no description (db=Gene3D db_id=G3DSA:3.40.1080.10 from=3 to=220 evalue=1.1e-69)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=3 to=221 evalue=4.7e-69)
KETOACID-COENZYME A TRANSFERASE (db=HMMPanther db_id=PTHR13707 from=26 to=223 evalue=1.6e-66 interpro_id=IPR004165 interpro_description=Coenzyme A transferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: CoA-transferase activity (GO:0008410))
CARPEP_2_3
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2220..2894
DNA (675bp) protein (225aa)
hypothetical protein
seg (db=Seg db_id=seg from=87 to=101)
KETOACID-COENZYME A TRANSFERASE (db=HMMPanther db_id=PTHR13707 from=7 to=224 evalue=7.0e-66 interpro_id=IPR004165 interpro_description=Coenzyme A transferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: CoA-transferase activity (GO:0008410))
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=6 to=221 evalue=1.5e-53)
CARPEP_2_4
Streptococcus parauberis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2908..4152
DNA (1245bp) protein (415aa)
Acetyl-CoA acetyltransferase n=3 Tax=Streptococcus RepID=B9DW90_STRU0 (db=UNIREF evalue=2.0e-172 bit_score=608.0 identity=72.15 coverage=99.0361445783133)
thlA; acetyl-CoA acetyltransferase
thlA; acetyl-CoA acetyltransferase
THIOLASE_3 (db=PatternScan db_id=PS00099 from=391 to=404 evalue=0.0 interpro_id=IPR020610 interpro_description=Thiolase, active site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
CARPEP_2_5
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

4161..5627
DNA (1467bp) protein (489aa)
Di-and tricarboxylate transporters
transmembrane_regions (db=TMHMM db_id=tmhmm from=462 to=484)
transmembrane_regions (db=TMHMM db_id=tmhmm from=420 to=442)
transmembrane_regions (db=TMHMM db_id=tmhmm from=380 to=399)
CARPEP_2_6
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5701..6195)
DNA (495bp) protein (165aa)
ribonucleoside-triphosphate reductase activating protein
RADICAL_ACTIVATING (db=PatternScan db_id=PS01087 from=14 to=35 evalue=0.0 interpro_id=IPR001989 interpro_description=Radical-activating enzyme, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
NrdG: anaerobic ribonucleoside-triphosphate (db=HMMTigr db_id=TIGR02491 from=2 to=151 evalue=1.8e-66 interpro_id=IPR012837 interpro_description=Ribonucleoside-triphosphate reductase activating, anaerobic GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: [formate-C-acetyltransferase]-activating enzyme activity (GO:0043365), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
Anaerobic ribonucleoside-triphosphate reductase class III, small subunit (db=HMMPIR db_id=PIRSF000368 from=1 to=164 evalue=9.7e-65 interpro_id=IPR012837 interpro_description=Ribonucleoside-triphosphate reductase activating, anaerobic GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: [formate-C-acetyltransferase]-activating enzyme activity (GO:0043365), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
CARPEP_2_7
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6195..8318)
DNA (2124bp) protein (708aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA2_9FIRM (db=UNIREF evalue=0.0 bit_score=1400.0 identity=94.06 coverage=99.7175141242938)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
NrdD: anaerobic ribonucleoside-triphosphate (db=HMMTigr db_id=TIGR02487 from=115 to=706 evalue=6.2e-168 interpro_id=IPR012833 interpro_description=Ribonucleoside-triphosphate reductase, anaerobic GO=Molecular Function: ribonucleoside-triphosphate reductase activity (GO:0008998), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
CARPEP_2_8
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8515..9324
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA1_9FIRM (db=UNIREF evalue=6.0e-83 bit_score=310.0 identity=77.5 coverage=88.5185185185185)
seg (db=Seg db_id=seg from=241 to=260)
seg (db=Seg db_id=seg from=197 to=222)
seg (db=Seg db_id=seg from=138 to=156)
CARPEP_2_9
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9600..10439)
DNA (840bp) protein (280aa)
Peptidase C26 n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC9_9FIRM (db=UNIREF evalue=3.0e-108 bit_score=395.0 identity=78.06 coverage=98.9285714285714)
peptidase C26
seg (db=Seg db_id=seg from=44 to=57)
seg (db=Seg db_id=seg from=91 to=101)
CARPEP_2_10
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10773..11693
DNA (921bp) protein (307aa)
DnaJ domain protein n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC8_9FIRM (db=UNIREF evalue=5.0e-112 bit_score=407.0 identity=85.12 coverage=93.8110749185668)
dnaJ3; chaperone protein DnaJ
seg (db=Seg db_id=seg from=186 to=195)
seg (db=Seg db_id=seg from=86 to=94)
CARPEP_2_11
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11703..14285
DNA (2583bp) protein (861aa)
ATP-dependent chaperone protein ClpB n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC7_9FIRM (db=UNIREF evalue=0.0 bit_score=1574.0 identity=92.21 coverage=99.6515679442509)
clpB; Chaperone protein ClpB
clpB; Chaperone protein ClpB
coiled-coil (db=Coil db_id=coil from=471 to=499 evalue=NA)
CARPEP_2_12
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14467..16239
DNA (1773bp) protein (591aa)
Putative uncharacterized protein n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC6_9FIRM (db=UNIREF evalue=2.0e-176 bit_score=623.0 identity=55.68 coverage=99.1539763113367)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=276 to=290)
CARPEP_2_13
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16583..18538
DNA (1956bp) protein (652aa)
Methionine--tRNA ligase n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC1_9FIRM (db=UNIREF evalue=0.0 bit_score=1107.0 identity=84.77 coverage=99.3865030674847)
metG; Methionine-tRNA ligase (EC:6.1.1.10)
metG; Methionine-tRNA ligase (EC:6.1.1.10)
seg (db=Seg db_id=seg from=511 to=522)
CARPEP_2_14
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18547..19311
DNA (765bp) protein (255aa)
Hydrolase, TatD family n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZC0_9FIRM (db=UNIREF evalue=1.0e-110 bit_score=402.0 identity=82.28 coverage=99.2156862745098)
yabD; putative deoxyribonuclease YabD (EC:3.1.21.-)
seg (db=Seg db_id=seg from=32 to=46)
seg (db=Seg db_id=seg from=115 to=122)
CARPEP_2_15
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19308..19859
DNA (552bp) protein (184aa)
primase-like protein
5S_RNA_mat_M5: ribonuclease M5 (db=HMMTigr db_id=TIGR00334 from=4 to=177 evalue=6.3e-46 interpro_id=IPR004466 interpro_description=Primase-related protein)
Toprim domain (db=superfamily db_id=SSF110455 from=2 to=120 evalue=2.1e-31)
(db=HMMPfam db_id=PF01751 from=6 to=76 evalue=1.0e-07 interpro_id=IPR006171 interpro_description=Toprim domain)
CARPEP_2_16
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19924..20703
DNA (780bp) protein (260aa)
Putative dimethyladenosine transferase n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZB8_9FIRM (db=UNIREF evalue=1.0e-102 bit_score=376.0 identity=82.06 coverage=85.3846153846154)
rsmA; Ribosomal RNA small subunit methyltransferase A (EC:2.1.1.182)
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=27 to=54 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ksgA: dimethyladenosine transferase (db=HMMTigr db_id=TIGR00755 from=2 to=255 evalue=4.2e-86 interpro_id=IPR011530 interpro_description=Ribosomal RNA adenine dimethylase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433))
CARPEP_2_17
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20711..21061
DNA (351bp) protein (117aa)
HTH transcriptional regulator, ArsR family
HTH_ARSR_1 (db=PatternScan db_id=PS00846 from=55 to=73 evalue=0.0 interpro_id=IPR018334 interpro_description=Transcription regulator ArsR, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00418 from=32 to=110 evalue=5.2e-31 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=10 to=114 evalue=1.5e-26)
CARPEP_2_18
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21133..21360
DNA (228bp) protein (76aa)
Glutaredoxin n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZB6_9FIRM (db=UNIREF evalue=7.0e-34 bit_score=146.0 identity=93.33 coverage=97.3684210526316)
hypothetical protein
GLUTAREDOXIN_1 (db=PatternScan db_id=PS00195 from=6 to=22 evalue=0.0 interpro_id=IPR011767 interpro_description=Glutaredoxin active site GO=Molecular Function: electron carrier activity (GO:0009055), Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=75 evalue=2.3e-20 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
CARPEP_2_19
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21413..21979
DNA (567bp) protein (189aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=187)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
CARPEP_2_20
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22543..22860
DNA (318bp) protein (106aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=56 to=69)
seg (db=Seg db_id=seg from=25 to=37)
(db=HMMPfam db_id=PF04277 from=9 to=89 evalue=5.4e-12 interpro_id=IPR005899 interpro_description=Sodium ion-translocating decarboxylase GO=Molecular Function: oxaloacetate decarboxylase activity (GO:0008948), Molecular Function: sodium ion transmembrane transporter activity (GO:0015081), Cellular Component: membrane (GO:0016020), Biological Process: sodium ion export (GO:0071436))
CARPEP_2_21
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22907..23338
DNA (432bp) protein (144aa)
hypothetical protein
Glutaconyl-CoA decarboxylase subunit gamma n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZB3_9FIRM (db=UNIREF evalue=2.0e-29 bit_score=131.0 identity=92.96 coverage=48.6111111111111)
seg (db=Seg db_id=seg from=33 to=71)
seg (db=Seg db_id=seg from=5 to=22)
CARPEP_2_22
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23354..24490
DNA (1137bp) protein (379aa)
gcdB3; Glutaconyl-CoA decarboxylase subunit beta (EC:4.1.1.70)
gcdB3; Glutaconyl-CoA decarboxylase subunit beta (EC:4.1.1.70)
Glutaconyl-CoA decarboxylase subunit beta n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZB2_9FIRM (db=UNIREF evalue=7.0e-171 bit_score=603.0 identity=92.59 coverage=99.4722955145119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=354 to=376)
CARPEP_2_23
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24561..25532
DNA (972bp) protein (324aa)
Glutaconate CoA-transferase subunit A n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZB1_9FIRM (db=UNIREF evalue=2.0e-170 bit_score=602.0 identity=94.12 coverage=99.3827160493827)
glutaconate CoA transferase subunit A
glutaconate CoA transferase subunit A
seg (db=Seg db_id=seg from=252 to=265)
CARPEP_2_24
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25532..26329
DNA (798bp) protein (266aa)
Glutaconate CoA-transferase subunit B n=3 Tax=Peptoniphilus RepID=D1VVD1_9FIRM (db=UNIREF evalue=2.0e-142 bit_score=508.0 identity=92.08 coverage=99.2481203007519)
gctB; Glutaconate CoA-transferase subunit B (EC:2.8.3.12)
gctB; Glutaconate CoA-transferase subunit B (EC:2.8.3.12)
no description (db=Gene3D db_id=G3DSA:3.40.810.20 from=3 to=262 evalue=4.3e-86)
CARPEP_2_25
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26341..28110
DNA (1770bp) protein (590aa)
Glutaconyl-CoA decarboxylase subunit alpha n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA9_9FIRM (db=UNIREF evalue=0.0 bit_score=1114.0 identity=97.28 coverage=99.6610169491526)
gcdA; Glutaconyl-CoA decarboxylase subunit alpha (EC:4.1.1.70)
gcdA; Glutaconyl-CoA decarboxylase subunit alpha (EC:4.1.1.70)
seg (db=Seg db_id=seg from=25 to=43)
CARPEP_2_26
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28350..29168
DNA (819bp) protein (273aa)
(R)-2-hydroxyglutaryl-CoA dehydratase activator n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA8_9FIRM (db=UNIREF evalue=1.0e-134 bit_score=483.0 identity=91.18 coverage=99.2673992673993)
hgdC; Activator of (R)-2-hydroxyglutaryl-CoA dehydratase
hgdC; Activator of (R)-2-hydroxyglutaryl-CoA dehydratase
seg (db=Seg db_id=seg from=259 to=269)
CARPEP_2_27
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29189..30511
DNA (1323bp) protein (441aa)
2-hydroxyglutaryl-CoA dehydratase D-component n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA7_9FIRM (db=UNIREF evalue=0.0 bit_score=885.0 identity=98.18 coverage=99.546485260771)
hgdA; (R)-2-hydroxyglutaryl-CoA dehydratase alpha subunit (EC:4.2.1.-)
hgdA; (R)-2-hydroxyglutaryl-CoA dehydratase alpha subunit (EC:4.2.1.-)
seg (db=Seg db_id=seg from=147 to=156)
CARPEP_2_28
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30524..31672
DNA (1149bp) protein (383aa)
2-hydroxyglutaryl-CoA dehydratase D-component n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZA6_9FIRM (db=UNIREF evalue=0.0 bit_score=729.0 identity=91.08 coverage=99.2167101827676)
hgdB; (R)-2-hydroxyglutaryl-CoA dehydratase subunit beta (EC:4.2.1.-)
hgdB; (R)-2-hydroxyglutaryl-CoA dehydratase subunit beta (EC:4.2.1.-)
(db=HMMPfam db_id=PF06050 from=36 to=377 evalue=5.2e-59 interpro_id=IPR010327 interpro_description=2-hydroxyglutaryl-CoA dehydratase, D-component)
CARPEP_2_29
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31885..32160
DNA (276bp) protein (92aa)
ATPase
hypothetical protein Prhi1_06086 n=1 Tax=Peptoniphilus rhinitidis 1-13 RepID=UPI000288C3B1
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:ACV23771.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrin
CARPEP_2_30
Peptostreptococcus sp. MV1, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32106..33212
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Treponema phagedenis F0421 RepID=E7NUZ2_TREPH (db=UNIREF evalue=4.0e-126 bit_score=455.0 identity=63.04 coverage=99.4579945799458)
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily)
seg (db=Seg db_id=seg from=257 to=268)
Displaying items 1-30 of 334 in total

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