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CARPRO_15

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARPRO_15_1
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(628..795)
-----------------
DNA (168bp)
protein (56aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Propionibacterium acnes SK137 RepID=D4H9K3_PROAS (db=UNIREF evalue=2.0e-13 bit_score=78.6 identity=85.71 coverage=73.2142857142857)
seg (db=Seg db_id=seg from=43 to=55)
Uncharacterized protein {ECO:0000313|EMBL:ERS68600.1}; TaxID=1203576 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KP
CARPRO_15_2
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

960..2165
-----------------
DNA (1206bp)
protein (402aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=63 Tax=Propionibacterium RepID=D4H9K5_PROAS (db=UNIREF evalue=0.0 bit_score=660.0 identity=86.28 coverage=99.5024875621891)
seg (db=Seg db_id=seg from=307 to=318)
CARPRO_15_3
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3308..6574
-----------------
DNA (3267bp)
protein (1089aa)
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) rbh
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) rbh
Isoleucyl-tRNA synthetase n=30 Tax=Bacteria RepID=SYI_PROAC (db=UNIREF evalue=0.0 bit_score=1932.0 identity=87.97 coverage=99.8163452708907)
seg (db=Seg db_id=seg from=786 to=799)
CARPRO_15_4
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6654..7676)
-----------------
DNA (1023bp)
protein (341aa)
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase
Oxidoreductase, NAD-binding domain protein n=61 Tax=Propionibacterium RepID=D4H9L1_PROAS (db=UNIREF evalue=5.0e-146 bit_score=521.0 identity=87.46 coverage=93.2551319648094)
seg (db=Seg db_id=seg from=108 to=125)
CARPRO_15_5
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7747..8088
-----------------
DNA (342bp)
protein (114aa)
putative regulatory protein
seg (db=Seg db_id=seg from=78 to=88)
(db=HMMPfam db_id=PF02467 from=23 to=84 evalue=1.0e-17 interpro_id=IPR003482 interpro_description=Transcription factor WhiB)
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1203576 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacte
CARPRO_15_6
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8085..8258
-----------------
DNA (174bp)
protein (58aa)
hypothetical protein
Putative uncharacterized protein n=4 Tax=Propionibacterium RepID=E4AIH8_PROAA (db=UNIREF evalue=3.0e-25 bit_score=117.0 identity=96.49 coverage=96.551724137931)
Uncharacterized protein {ECO:0000313|EMBL:ERS40687.1}; TaxID=1203572 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KP
CARPRO_15_7
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8255..8710
-----------------
DNA (456bp)
protein (152aa)
endoribonuclease L-PSP
Endoribonuclease L-PSP n=74 Tax=Propionibacterium RepID=D4H9L4_PROAS (db=UNIREF evalue=6.0e-49 bit_score=196.0 identity=93.38 coverage=98.6842105263158)
seg (db=Seg db_id=seg from=65 to=87)
seg (db=Seg db_id=seg from=89 to=97)
CARPRO_15_8
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8812..9513)
-----------------
DNA (702bp)
protein (234aa)
putative transcriptional regulator
putative transcriptional regulator
Transcriptional regulator, Crp/Fnr family n=73 Tax=Propionibacterium RepID=D4H9L5_PROAS (db=UNIREF evalue=2.0e-117 bit_score=424.0 identity=93.13 coverage=99.1452991452991)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=5 to=139 evalue=2.4e-26 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
CARPRO_15_9
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9651..10364
-----------------
DNA (714bp)
protein (238aa)
endonuclease III rbh
endonuclease III rbh
Endonuclease III n=63 Tax=Propionibacterium acnes RepID=E4A4U9_PROAA (db=UNIREF evalue=5.0e-109 bit_score=397.0 identity=85.09 coverage=95.3781512605042)
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=199 to=215 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
CARPRO_15_10
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10361..10948
-----------------
DNA (588bp)
protein (196aa)
hypothetical protein rbh
hypothetical protein rbh
Antioxidant, AhpC/TSA family n=9 Tax=Propionibacterium acnes RepID=E4AIH4_PROAA (db=UNIREF evalue=5.0e-88 bit_score=326.0 identity=78.76 coverage=97.9591836734694)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=192 evalue=3.5e-31 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
CARPRO_15_11
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10945..11601
-----------------
DNA (657bp)
protein (219aa)
NUDIX family hydrolase
NUDIX family hydrolase
Hydrolase, NUDIX family n=66 Tax=Propionibacterium RepID=D4H9L8_PROAS (db=UNIREF evalue=1.0e-97 bit_score=359.0 identity=89.45 coverage=99.0867579908676)
NUDIX (db=ProfileScan db_id=PS51462 from=26 to=164 evalue=0.0 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
CARPRO_15_12
unknown

Not on your lists

11828..12436
-----------------
DNA (609bp)
protein (203aa)
seg (db=Seg db_id=seg from=6 to=19)
seg (db=Seg db_id=seg from=23 to=57)
CARPRO_15_13
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12391..13659)
-----------------
DNA (1269bp)
protein (423aa)
Na+/H+ antiporter NhaA rbh
Na+/H+ antiporter NhaA rbh
Na(+)/H(+) antiporter nhaA n=73 Tax=Propionibacterium RepID=NHAA_PROAC (db=UNIREF evalue=0.0 bit_score=692.0 identity=90.48 coverage=99.0543735224586)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=287)
CARPRO_15_14
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13827..14585)
-----------------
DNA (759bp)
protein (253aa)
methyltransferase
methyltransferase
Methyltransferase domain protein n=8 Tax=Propionibacterium RepID=D4H9M1_PROAS (db=UNIREF evalue=1.0e-121 bit_score=439.0 identity=84.92 coverage=99.2094861660079)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=36 to=143 evalue=1.5e-11)
CARPRO_15_15
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14713..15771
-----------------
DNA (1059bp)
protein (353aa)
hypothetical protein
hypothetical protein
CpaE-like protein n=69 Tax=Propionibacterium RepID=D4H9M2_PROAS (db=UNIREF evalue=5.0e-86 bit_score=321.0 identity=84.78 coverage=77.9036827195467)
seg (db=Seg db_id=seg from=223 to=237)
CARPRO_15_16
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15768..16934
-----------------
DNA (1167bp)
protein (389aa)
putative secretory protein
putative secretory protein
Helicase/secretion neighborhood ATPase n=73 Tax=Propionibacterium RepID=D4H9M3_PROAS (db=UNIREF evalue=3.0e-165 bit_score=585.0 identity=90.96 coverage=99.2287917737789)
seg (db=Seg db_id=seg from=303 to=314)
CARPRO_15_17
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16931..17701
-----------------
DNA (771bp)
protein (257aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=67 Tax=Propionibacterium RepID=D4H9M4_PROAS (db=UNIREF evalue=1.0e-90 bit_score=336.0 identity=80.47 coverage=99.2217898832685)
seg (db=Seg db_id=seg from=154 to=166)
CARPRO_15_18
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17698..18447
-----------------
DNA (750bp)
protein (250aa)
type II secretion system F domain protein
seg (db=Seg db_id=seg from=193 to=209)
seg (db=Seg db_id=seg from=101 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
CARPRO_15_19
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18645..18932
-----------------
DNA (288bp)
protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGY77748.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_15_20
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18929..19339
-----------------
DNA (411bp)
protein (137aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
seg (db=Seg db_id=seg from=13 to=31)
Uncharacterized protein {ECO:0000313|EMBL:ERS68621.1}; TaxID=1203576 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KP
CARPRO_15_21
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19336..19740
-----------------
DNA (405bp)
protein (135aa)
TadE-like protein
TadE-like protein n=69 Tax=Propionibacterium RepID=D4H9M8_PROAS (db=UNIREF evalue=1.0e-41 bit_score=172.0 identity=64.18 coverage=98.5185185185185)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
tadE_like_DECH: helicase/secretion nei (db=HMMTigr db_id=TIGR03816 from=18 to=132 evalue=6.5e-39 interpro_id=IPR021202 interpro_description=Helicase/secretion neighbourhood TadE-like protein)
CARPRO_15_22
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20041..22197)
-----------------
DNA (2157bp)
protein (719aa)
DEAD/DEAH box helicase
DEAD/DEAH box helicase
Helicase C-terminal domain protein (Fragment) n=74 Tax=Propionibacterium RepID=F5TW52_9ACTO (db=UNIREF evalue=0.0 bit_score=848.0 identity=90.36 coverage=66.2030598052851)
seg (db=Seg db_id=seg from=650 to=662)
CARPRO_15_23
Propionibacterium sp. HGH0353, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22692..23912
-----------------
DNA (1221bp)
protein (407aa)
transferase
transferase
Methyltransferase, HemK family n=72 Tax=Propionibacterium RepID=D4H9N1_PROAS (db=UNIREF evalue=0.0 bit_score=739.0 identity=89.16 coverage=99.5085995085995)
N6_MTASE (db=PatternScan db_id=PS00092 from=134 to=140 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
CARPRO_15_24
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24013..24303
-----------------
DNA (291bp)
protein (97aa)
hypothetical protein
Conserved domain protein n=4 Tax=Propionibacterium RepID=E4AIF6_PROAA (db=UNIREF evalue=7.0e-45 bit_score=182.0 identity=91.67 coverage=97.9381443298969)
(db=HMMPfam db_id=PF10006 from=27 to=94 evalue=1.3e-25 interpro_id=IPR018720 interpro_description=Domain of unknown function DUF2249)
Uncharacterized protein {ECO:0000313|EMBL:ERS40667.1}; TaxID=1203572 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KP
CARPRO_15_25
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24542..27328
-----------------
DNA (2787bp)
protein (929aa)
DNA topoisomerase I
DNA topoisomerase I
DNA topoisomerase n=73 Tax=Propionibacterium RepID=D4H9N3_PROAS (db=UNIREF evalue=0.0 bit_score=1567.0 identity=92.53 coverage=94.7255113024758)
seg (db=Seg db_id=seg from=632 to=643)
CARPRO_15_26
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27330..28817
-----------------
DNA (1488bp)
protein (496aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=69 Tax=Propionibacterium RepID=D4H9N4_PROAS (db=UNIREF evalue=0.0 bit_score=823.0 identity=84.04 coverage=99.5967741935484)
Uncharacterized protein n=3 Tax=Propionibacterium avidum RepID=M9VD32_9ACTO
CARPRO_15_27
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28810..29457
-----------------
DNA (648bp)
protein (216aa)
putative thymidylate kinase rbh
Thymidylate kinase n=4 Tax=Propionibacterium RepID=E4AIF3_PROAA (db=UNIREF evalue=7.0e-87 bit_score=323.0 identity=80.0 coverage=99.0740740740741)
seg (db=Seg db_id=seg from=138 to=150)
THYMIDYLATE_KINASE (db=PatternScan db_id=PS01331 from=104 to=116 evalue=0.0 interpro_id=IPR018095 interpro_description=Thymidylate kinase, conserved site GO=Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthetic process (GO:0006233))
CARPRO_15_28
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29491..30747
-----------------
DNA (1257bp)
protein (419aa)
DNA polymerase III subunit delta' rbh
DNA polymerase III subunit delta' rbh
DNA polymerase III, delta' subunit n=73 Tax=Propionibacterium RepID=D4H9N6_PROAS (db=UNIREF evalue=0.0 bit_score=638.0 identity=94.0 coverage=95.2267303102625)
seg (db=Seg db_id=seg from=215 to=231)
CARPRO_15_29
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30852..31658
-----------------
DNA (807bp)
protein (269aa)
hypothetical protein
hypothetical protein
DoxX protein n=33 Tax=Propionibacterium RepID=E4AIF1_PROAA (db=UNIREF evalue=2.0e-83 bit_score=312.0 identity=90.91 coverage=92.9368029739777)
seg (db=Seg db_id=seg from=252 to=266)
CARPRO_15_30
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31796..32488
-----------------
DNA (693bp)
protein (231aa)
hypothetical protein
seg (db=Seg db_id=seg from=33 to=49)
seg (db=Seg db_id=seg from=128 to=133)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (db=HMMPanther db_id=PTHR21600:SF3 from=48 to=192 evalue=1.1e-32)
Displaying items 1-30 of 38 in total

View Taxonomy