ggKbase home page

rifcsphigho2_01_scaffold_3844

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_3844_1
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(147..410)
DNA (264bp) protein (88aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_3844_2
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

554..883
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369AAB9
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_3844_3
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists


comp(1292..1741)
DNA (450bp) protein (150aa)
RNA-processing protein; K06961 ribosomal RNA assembly protein Tax=CG_Pacearch_02
KH domain protein id=5799968 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
KH domain protein
rifcsphigho2_01_scaffold_3844_4

Not on your lists

comp(1788..2270)
DNA (483bp) protein (161aa)
nucleic acid binding protein
nucleic acid binding protein id=5240525 bin=GW2011_AR10_complete species=Oribacterium sinus genus=Oribacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Nucleic acid binding protein {ECO:0000313|EMBL:AJF59518.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_3844_5

Not on your lists

comp(2255..2566)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M671_HALMO
Uncharacterized protein {ECO:0000313|EMBL:KKN31900.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
conserved hypothetical protein (UPF0175)
rifcsphigho2_01_scaffold_3844_6
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(2624..3043)
DNA (420bp) protein (140aa)
Translation initiation factor 1A n=3 Tax=Methanocaldococcus RepID=IF1A_METJA id=5103231 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
translation initiation factor IF-1; K03236 translation initiation factor 1A Tax=RBG_13_Pacearchaeota_33_26_curated
Translation initiation factor 1A
rifcsphigho2_01_scaffold_3844_7
unknown

Not on your lists

comp(3068..3256)
DNA (189bp) protein (63aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_8
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(3287..8170)
DNA (4884bp) protein (1628aa)
rpoA1; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_33_26_curated
DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RPOA2_METJA id=5103776 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit A''
rifcsphigho2_01_scaffold_3844_9
unknown

Not on your lists

comp(8180..8344)
DNA (165bp) protein (55aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_10
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(8347..11610)
DNA (3264bp) protein (1088aa)
DNA-directed RNA polymerase subunit B; K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=CG_Pacearch_05
DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Pyrococcus furiosus RepID=I6UQX5_9EURY
rifcsphigho2_01_scaffold_3844_11
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(11616..11849)
DNA (234bp) protein (78aa)
DNA-directed RNA polymerase subunit H (EC:2.7.7.6); K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=AR13
DNA-directed RNA polymerase subunit H n=1 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P938_METFA
rpoH; DNA-directed RNA polymerase subunit H
rifcsphigho2_01_scaffold_3844_12
unknown

Not on your lists

comp(12382..12894)
DNA (513bp) protein (171aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_13
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(12996..13436)
DNA (441bp) protein (147aa)
LACA THIOREDOXIN n=1 Tax=synthetic construct RepID=UPI00038A5F38
trx; thioredoxin; K03671 thioredoxin 1 Tax=RBG_13_Pacearchaeota_33_26_curated
trx; thioredoxin
rifcsphigho2_01_scaffold_3844_14
GWA1_Berkelbacteria_39_10_partial, Berkelbacteria, Bacteria

Not on your lists

comp(13405..16638)
DNA (3234bp) protein (1078aa)
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase id=3794657 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
Ribonucleoside-diphosphate reductase {ECO:0000313|EMBL:KKQ90879.1}; TaxID=1618332 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_39_10.;"
rifcsphigho2_01_scaffold_3844_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16929..17375)
DNA (447bp) protein (149aa)
nrdR; NrdR family transcriptional regulator; K07738 transcriptional repressor NrdR Tax=RBG_13_Pacearchaeota_36_9_curated
Transcriptional repressor NrdR id=4542776 bin=GWC2_Elusimicrobia_64_44 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
ATP-cone domain-containing protein
rifcsphigho2_01_scaffold_3844_16
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

17638..17907
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI0003768335
hypothetical protein Tax=CG_Pacearch_03
hypothetical protein
rifcsphigho2_01_scaffold_3844_17
unknown

Not on your lists

comp(18057..18455)
DNA (399bp) protein (133aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_18

Not on your lists

comp(18543..18926)
DNA (384bp) protein (128aa)
Putative transcriptional regulator n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YUS7_9EURY
Marine sediment metagenome DNA, contig: S01H1_L01890 {ECO:0000313|EMBL:GAF85470.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
putative transcriptional regulator
rifcsphigho2_01_scaffold_3844_19
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

19056..19610
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E1242
LemA family protein Tax=CG_Pacearch_02
LemA protein
rifcsphigho2_01_scaffold_3844_20
unknown

Not on your lists

19638..20117
DNA (480bp) protein (160aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_21
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(20632..21423)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003650638
hypothetical protein Tax=CG_Pacearch_05
rifcsphigho2_01_scaffold_3844_22
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(21622..24318)
DNA (2697bp) protein (899aa)
ATP dependent helicase, lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=CG_Pacearch_05
ATP dependent helicase, lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=5049176 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DEAD/H associated protein
rifcsphigho2_01_scaffold_3844_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(24423..24944)
DNA (522bp) protein (174aa)
Protein containing Nucleotide binding protein, PINc domain n=1 Tax=sediment metagenome RepID=D9PJC5_9ZZZZ
hypothetical protein Tax=CG_Woesearch_02
Protein containing Nucleotide binding protein, PINc protein
rifcsphigho2_01_scaffold_3844_24
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(24928..25164)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJC6_9ZZZZ id=5103633 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=CG_Micra_05
hypothetical protein
rifcsphigho2_01_scaffold_3844_25
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

25301..26227
DNA (927bp) protein (309aa)
Heat shock protein HtpX (EC:3.4.24.-)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376731D
Protease HtpX homolog Tax=AR13
rifcsphigho2_01_scaffold_3844_26
GWB1_OD1_49_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

26224..26685
DNA (462bp) protein (154aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW11783.1}; TaxID=1618664 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9.;"
Putative uncharacterized protein id=3027243 bin=GWC1_CPR2_39_9 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
hypothetical protein
rifcsphigho2_01_scaffold_3844_27
unknown

Not on your lists

26721..27299
DNA (579bp) protein (193aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_28
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(27333..28088)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8U5_METMS id=5103711 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K09807 hypothetical protein Tax=AR13
hypothetical protein
rifcsphigho2_01_scaffold_3844_29
unknown

Not on your lists

comp(28104..28883)
DNA (780bp) protein (260aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3844_30
unknown

Not on your lists

comp(28894..29421)
DNA (528bp) protein (176aa)

This feature has no annotations

Displaying items 1-30 of 51 in total

View Taxonomy