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rifcsplowo2_01_scaffold_4814

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_4814_1
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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156..851
DNA (696bp) protein (232aa)
racD-1; aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13] Tax=CG_Aenigma_01
racD-1; aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13] id=5043115 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
aspartate racemase
rifcsplowo2_01_scaffold_4814_2
unknown

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comp(1117..1989)
DNA (873bp) protein (291aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_3

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comp(2054..3703)
DNA (1650bp) protein (550aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=5041804 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Phenylalanine-tRNA ligase beta subunit
rifcsplowo2_01_scaffold_4814_4
unknown

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comp(3706..4461)
DNA (756bp) protein (252aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_5
AR15, Woesearchaeaota, DPANN, Archaea

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comp(4463..5971)
DNA (1509bp) protein (503aa)
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Phenylalanine--tRNA ligase alpha subunit Tax=AR15
Phenylalanine-tRNA ligase alpha subunit
rifcsplowo2_01_scaffold_4814_6

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comp(6004..6807)
DNA (804bp) protein (268aa)
hypothetical protein id=5041796 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47224.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsplowo2_01_scaffold_4814_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(7163..8209)
DNA (1047bp) protein (349aa)
cell division protein pelota Tax=CG_Woesearch_02
Protein pelota homolog id=5800182 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
mRNA surveillance protein Pelota
rifcsplowo2_01_scaffold_4814_8

Not on your lists

8256..9434
DNA (1179bp) protein (393aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO49055.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
id=5046362 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_4814_9
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

9744..10022
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI00034B0155
hypothetical protein Tax=CG_Micra_05
hypothetical protein
rifcsplowo2_01_scaffold_4814_10
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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10019..10255
DNA (237bp) protein (79aa)
YcfA family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KRI8_ARCVS
hypothetical protein
YcfA family protein {ECO:0000313|EMBL:AEA46753.1}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus veneficus (stra
rifcsplowo2_01_scaffold_4814_11
unknown

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10493..12541
DNA (2049bp) protein (683aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_12
AR9, Woesearchaeaota, DPANN, Archaea

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12538..13389
DNA (852bp) protein (284aa)
id=5046358 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR9
rifcsplowo2_01_scaffold_4814_13

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13424..14350
DNA (927bp) protein (309aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50215.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
id=5046358 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_4814_14
AR9, Woesearchaeaota, DPANN, Archaea

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14383..15285
DNA (903bp) protein (301aa)
Tax=AR9
rifcsplowo2_01_scaffold_4814_15

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comp(15266..16207)
DNA (942bp) protein (314aa)
Replication factor C small subunit, replication factor C small subunit {ECO:0000313|EMBL:KHO50213.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rfc; replication factor C small subunit; K04801 replication factor C small subunit id=5046355 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor C small subunit
rifcsplowo2_01_scaffold_4814_16
unknown

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comp(16497..16826)
DNA (330bp) protein (110aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(16835..17101)
DNA (267bp) protein (89aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5046354 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
PRC-barrel protein
rifcsplowo2_01_scaffold_4814_18
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

17113..17742
DNA (630bp) protein (210aa)
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=CG_Woesearch_02
tRNA-intron endonuclease id=5800108 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
tRNA-intron endonuclease
rifcsplowo2_01_scaffold_4814_19
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

17781..18809
DNA (1029bp) protein (343aa)
hypothetical protein
id=5046345 Tax=RBG_13_Woesearchaeota_36_6_curated
Putative uncharacterized protein id=5800109 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_4814_20
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

18760..19776
DNA (1017bp) protein (339aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=AR9
Flap endonuclease 1 n=1 Tax=Thermofilum sp. 1910b RepID=S5ZV03_9CREN
endonuclease
rifcsplowo2_01_scaffold_4814_21
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

19776..20768
DNA (993bp) protein (331aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=AR9
Met-10+ protein id=5800111 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
methyltransferase
rifcsplowo2_01_scaffold_4814_22
unknown

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comp(21297..22322)
DNA (1026bp) protein (342aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_23

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comp(22566..23696)
DNA (1131bp) protein (377aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53035.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit id=5041798 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
proteasome-activating nucleotidase
rifcsplowo2_01_scaffold_4814_24
unknown

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24117..24788
DNA (672bp) protein (224aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4814_25
Listeria phage LMSP-25, Caudovirales, Viruses

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24764..25495
DNA (732bp) protein (244aa)
Pentapeptide repeat protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VJM2_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:AID17457.1}; TaxID=1486414 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Listeria phage LMTA-57.;"
endoribonuclease L-PSP
rifcsplowo2_01_scaffold_4814_26
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25528..26919
DNA (1392bp) protein (464aa)
Putative low-complexity protein n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TRU1_9CYAN
putative low-complexity protein
Putative low-complexity protein {ECO:0000313|EMBL:AFY83084.1}; TaxID=56110 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC
rifcsplowo2_01_scaffold_4814_27
CG_Micra_05, Micraarchaeota, Archaea

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comp(27114..28373)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9PAI9_CYAGP
hypothetical protein Tax=CG_Micra_05
hypothetical protein
rifcsplowo2_01_scaffold_4814_28

Not on your lists

comp(28513..29511)
DNA (999bp) protein (333aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:KHO49689.1}; EC=3.4.11.9 {ECO:0000313|EMBL:KHO49689.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
PepQ-2 cobalt-dependent proline dipeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] id=5041800 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
YpdF-like aminopeptidase
rifcsplowo2_01_scaffold_4814_29
AR9, Woesearchaeaota, DPANN, Archaea

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29555..30829
DNA (1275bp) protein (425aa)
processing peptidase (EC:3.4.24.64) Tax=AR9
processing peptidase (EC:3.4.24.64) id=5041801 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
zinc protease
rifcsplowo2_01_scaffold_4814_30

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31073..31882
DNA (810bp) protein (270aa)
transposase IS605 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036B3F72
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:KKS53562.1}; TaxID=1618822 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_28.;"
cyclic nucleotide-binding protein
Displaying 30 items

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