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RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_1
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

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1..483
DNA (483bp) protein (161aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_37_25_curated
hypothetical protein id=15190336 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_2
R_OD1_Nomurabacteria_36_29, Nomurabacteria, Parcubacteria, Bacteria

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539..1123
DNA (585bp) protein (195aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_36_29_curated
sigma-24 (FecI-like protein); K03088 RNA polymerase sigma-70 factor, ECF subfamily id=5802740 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ECF subfamily RNA polymerase sigma-24 subunit
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_3
Parcubacteria bacterium GW2011_GWC1_35_8, Parcubacteria, Bacteria

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1245..1649
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP86555.1}; TaxID=1618893 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_35_8.;"
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_4
R_OD1_Nomurabacteria_36_29, Nomurabacteria, Parcubacteria, Bacteria

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1661..2152
DNA (492bp) protein (164aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_36_29_curated
transmembrane_regions id=5802742 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_5
GWA2_OD1_41_25_partial, Nomurabacteria, Parcubacteria, Bacteria

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2159..3832
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YFD8_9BACT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KKS04066.1}; TaxID=1618736 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_41_25.;"
Efflux transporter, RND family, MFP subunit
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_6
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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3829..4509
DNA (681bp) protein (227aa)
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
PhnL; ABC transporter; K02003 putative ABC transport system ATP-binding protein id=5802744 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_7
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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4554..5762
DNA (1209bp) protein (403aa)
ABC-type antimicrobial peptide transport system, permease component Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
ABC transporter, permease protein id=4731804 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
multidrug ABC transporter substrate-binding protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_8
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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5770..6420
DNA (651bp) protein (217aa)
protein RluF; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
Ribosomal large subunit pseudouridine synthase F id=2192955 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rluF; protein RluF
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_9
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(6386..7894)
DNA (1509bp) protein (503aa)
ABC transporter; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
Uncharacterized ABC transporter ATP-binding protein ybiT id=3012797 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_10
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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8001..8594
DNA (594bp) protein (198aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_11
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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8724..8921
DNA (198bp) protein (66aa)
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family) id=5802143 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_12
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(8983..9246)
DNA (264bp) protein (88aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
hypothetical protein, conserved id=133560 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_13
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(9253..9504)
DNA (252bp) protein (84aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
30S ribosomal protein S20 id=5227449 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S20
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_14
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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9587..10153
DNA (567bp) protein (189aa)
ruvA; holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.4.12) Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PX57_9BACT
ruvA; Holliday junction DNA helicase RuvA
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_15
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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10165..11064
DNA (900bp) protein (300aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
hypothetical protein id=5801943 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
formamidopyrimidine-DNA glycosylase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_16
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(11096..11587)
DNA (492bp) protein (164aa)
tRNA/rRNA methyltransferase SpoU Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
tRNA/rRNA methyltransferase (SpoU) id=5227445 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
tRNA/rRNA methyltransferase SpoU
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_17
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(11584..12828)
DNA (1245bp) protein (415aa)
excinuclease ABC C subunit domain-containing protein; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
UvrC Helix-hairpin-helix N-terminal domain family id=5226938 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
excinuclease ABC C subunit domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_10284_18
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(12860..14131)
DNA (1272bp) protein (424aa)
UvrA family protein; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_37_8_curated
id=5226936 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Excinuclease ABC subunit A
Displaying 18 items

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