ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_1
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(9..395)
DNA (387bp) protein (129aa)
hypothetical protein Tax=GWA2_OD1_47_10b
hypothetical protein id=3950287 bin=GWA2_CPR4_42_17 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_2
unknown

Not on your lists

520..783
DNA (264bp) protein (88aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_3
R_RIF_OD1_04_46_36, RIF-OD1-4, Parcubacteria, Bacteria

Not on your lists

865..1557
DNA (693bp) protein (231aa)
Predicted protein n=1 Tax=Streptomyces sp. AA4 RepID=D9VHA5_9ACTO
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_04_46_36_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_4
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(1651..1854)
DNA (204bp) protein (68aa)
RNA polymerase sigma factor, sigma-70 family Tax=GWA2_OD1_47_10b
sigma-24 (FecI-like protein); K03088 RNA polymerase sigma-70 factor, ECF subfamily id=5802740 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_5
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

1869..2495
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EKP3_9BACT
Putative uncharacterized protein Tax=GWA2_OD1_47_10b
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_6
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(2675..3289)
DNA (615bp) protein (205aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKU53075.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
sigma-24 (FecI-like protein); K03088 RNA polymerase sigma-70 factor, ECF subfamily id=5802740 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RNA polymerase subunit sigma-24
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_7
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

3392..4363
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-N07 RepID=UPI00036C6CCB
Putative UDP-glucose 4-epimerase Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_8
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

4408..4644
DNA (237bp) protein (79aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_9
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

4634..5875
DNA (1242bp) protein (414aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] id=15190448 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
DEAD/DEAH box helicase domain protein Tax=GWA2_OD1_47_10b
ATP-dependent RNA helicase RhlE
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_10
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

5930..6403
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU53079.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
hypothetical protein
hypothetical protein id=5241303 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_11
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

6405..6722
DNA (318bp) protein (106aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKU53080.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
transmembrane_regions id=5241304 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_12
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

7269..7769
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU53081.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_13
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

7790..8107
DNA (318bp) protein (106aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_14
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

8125..8883
DNA (759bp) protein (253aa)
hypothetical protein Tax=GWA2_OD1_47_10b
seg 5..18 id=27553 bin=ACD24 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=ACD24 organism_group=WWE3 organism_desc=WWE3
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_15
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

8897..10543
DNA (1647bp) protein (549aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_16
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

10540..11181
DNA (642bp) protein (214aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPHIGHO2_01_FULL_OD1_48_80_rifcsphigho2_01_scaffold_57689_17
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

11211..11915
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3S9_GEODF
Uncharacterized protein Tax=GWA2_OD1_47_10b
hypothetical protein
Displaying 17 items

View Taxonomy