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RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_1
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2..376)
DNA (375bp) protein (125aa)
multidrug ABC transporter ATPase and permease Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_2
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(384..614)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000362D658
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_3
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(617..1054)
DNA (438bp) protein (146aa)
3-demethylubiquinone-9 3-methyltransferase; K04750 PhnB protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
3-demethylubiquinone-9 3-methyltransferase; K04750 PhnB protein id=13204 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
3-demethylubiquinone-9 3-methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_4
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(1126..1575)
DNA (450bp) protein (150aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_5
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(1652..2212)
DNA (561bp) protein (187aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein id=4649108 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_6
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2217..2546)
DNA (330bp) protein (110aa)
transmembrane_regions Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
transmembrane_regions id=5802149 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_7
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2553..2756)
DNA (204bp) protein (68aa)
XRE family transcriptional regulator n=1 Tax=Clostridium beijerinckii RepID=UPI0002DC6A5E
hypothetical protein; K07727 putative transcriptional regulator Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
XRE family transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(2763..3224)
DNA (462bp) protein (154aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
YoaS protein id=4649098 bin=GWA2_OP3_52_12 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3610..3978)
DNA (369bp) protein (123aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Putative uncharacterized protein id=4753759 bin=GWC2_Methylomirabilis_70_24 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_10
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(3988..4623)
DNA (636bp) protein (212aa)
methionine-R-sulfoxide reductase; K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
methionine-R-sulfoxide reductase (EC:1.8.4.11 1.8.4.12)
methionine sulfoxide reductase n=1 Tax=Desulfovibrio longus RepID=UPI0003B2EB03
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_11
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(4650..5018)
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_12
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(5166..5867)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PHR6_9RHIZ
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_13
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(5964..6659)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AQR5_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_14
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(6656..7255)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YJ64_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_15
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(7346..7684)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H041_9SPHN
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_16
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(8165..8854)
DNA (690bp) protein (230aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_17
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(8844..9089)
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_18
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(9452..10543)
DNA (1092bp) protein (364aa)
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
DNA polymerase III, subunits gamma and tau id=3012789 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA polymerase III subunits gamma and tau
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_19
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(10577..11209)
DNA (633bp) protein (211aa)
putative GtrA-like protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Membrane protein, GtrA superfamily id=3012784 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_20
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(11206..13653)
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GAH3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_21
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(13650..13865)
DNA (216bp) protein (72aa)
id=2192937 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
id=2192937 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_22
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(13869..14120)
DNA (252bp) protein (84aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_23
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(14130..14339)
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_24
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

14427..16379
DNA (1953bp) protein (651aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Tetratricopeptide repeat protein id=3012775 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_25
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(16391..17248)
DNA (858bp) protein (286aa)
id=3012706 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
id=3012706 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_26
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(17245..18510)
DNA (1266bp) protein (422aa)
seryl-tRNA synthetase (EC:6.1.1.11) Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
seryl-tRNA synthetase (EC:6.1.1.11)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003648AD3
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_27
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(18520..19995)
DNA (1476bp) protein (492aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Lysine--tRNA ligase id=3012691 bin=GWC1_OD1_38_17 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
lysyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_28
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists


comp(20159..20317)
DNA (159bp) protein (53aa)
50S ribosomal protein L33 n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSL5_GRAMM
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
50S ribosomal protein L33
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_29
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(21249..21641)
DNA (393bp) protein (131aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
RIFCSPHIGHO2_01_FULL_OD1_51_74_rifcsphigho2_01_scaffold_1881_30
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

comp(21653..22240)
DNA (588bp) protein (196aa)
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
Elongation factor Ts id=3506640 bin=GWC1_OD1_38_17 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
tsf; elongation factor Ts
Displaying items 1-30 of 48 in total

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