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RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_1
RHI_OD1_44_17, Parcubacteria, Bacteria

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1..480
DNA (480bp) protein (160aa)
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor id=57010 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor id=57010 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_2
RHI_OD1_44_17, Parcubacteria, Bacteria

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626..949
DNA (324bp) protein (108aa)
methionine-R-sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
methionine-R-sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000363339D
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000363339D
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_3
RHI_OD1_44_17, Parcubacteria, Bacteria

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978..1334
DNA (357bp) protein (119aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_4
RHI_OD1_44_17, Parcubacteria, Bacteria

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1678..2361
DNA (684bp) protein (228aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
haloacid dehalogenase, IB family protein id=8332 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
haloacid dehalogenase, IB family protein id=8332 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_5
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2371..2820
DNA (450bp) protein (150aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
putative integral membrane protein id=5045771 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
putative integral membrane protein id=5045771 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_6
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2827..3300
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein id=133350 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein id=133350 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_7
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3329..3511
DNA (183bp) protein (61aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_8
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3549..5114
DNA (1566bp) protein (522aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RND family efflux transporter MFP subunit id=5803398 bin=OD1_GWC2_34_28 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RND family efflux transporter MFP subunit id=5803398 bin=OD1_GWC2_34_28 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_9
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

5116..5826
DNA (711bp) protein (237aa)
ABC transporter related protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
ABC transporter related protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Macrolide export ATP-binding/permease protein MacB id=3736880 bin=GWC2_OD1_43_27 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Macrolide export ATP-binding/permease protein MacB id=3736880 bin=GWC2_OD1_43_27 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_10
RHI_OD1_44_17, Parcubacteria, Bacteria

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5842..7086
DNA (1245bp) protein (415aa)
export ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
export ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein; K02004 putative ABC transport system permease protein id=5802299 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
hypothetical protein; K02004 putative ABC transport system permease protein id=5802299 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_11
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

7154..7927
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E9M9_9BACT
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E9M9_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_12
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

7924..8046
DNA (123bp) protein (41aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_17095_13
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

8056..8526
DNA (471bp) protein (157aa)
truB; tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
truB; tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
Displaying 13 items

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