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RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_1
RHI_OD1_44_17, Parcubacteria, Bacteria

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1..501
DNA (501bp) protein (167aa)
Type II secretion system protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Type II secretion system protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC id=15190179 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC id=15190179 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_2
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

795..1304
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CQG4_9BACT
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CQG4_9BACT
prepilin-type N-terminal cleavage/methylation domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_3
RHI_OD1_44_17, Parcubacteria, Bacteria

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1304..2176
DNA (873bp) protein (291aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43) Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
type 4 prepilin peptidase 1 (EC:3.4.23.43) Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=15190181 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=15190181 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_4
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2232..2843
DNA (612bp) protein (204aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_5
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2815..3402
DNA (588bp) protein (196aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_6
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3399..3926
DNA (528bp) protein (176aa)
alias=gwe2_scaffold_198_43 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
alias=gwe2_scaffold_198_43 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
alias=gwe2_scaffold_198_43 id=15190184 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
alias=gwe2_scaffold_198_43 id=15190184 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_7
RHI_OD1_44_17, Parcubacteria, Bacteria

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3932..4576
DNA (645bp) protein (215aa)
transmembrane_regions 15..37 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
transmembrane_regions 15..37 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
transmembrane_regions 15..37 id=133676 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
transmembrane_regions 15..37 id=133676 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_8
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

4586..6610
DNA (2025bp) protein (675aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
NAD-dependent DNA ligase (EC:6.5.1.2)
NAD-dependent DNA ligase (EC:6.5.1.2)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_9
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

6623..6913
DNA (291bp) protein (97aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Aspartyl/glutamyl-tRNA amidotransferase subunit C n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2EVE0_9LACO id=133862 bin=ACD81 species=Lactobacillus vaginalis genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Aspartyl/glutamyl-tRNA amidotransferase subunit C n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2EVE0_9LACO id=133862 bin=ACD81 species=Lactobacillus vaginalis genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_10
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

6915..8354
DNA (1440bp) protein (480aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_c
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_c
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_11
RHI_OD1_44_17, Parcubacteria, Bacteria

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8341..8835
DNA (495bp) protein (165aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Putative uncharacterized protein id=1968393 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Putative uncharacterized protein id=1968393 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_12
RHI_OD1_44_17, Parcubacteria, Bacteria

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9346..9468
DNA (123bp) protein (41aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_13
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists


9582..10589
DNA (1008bp) protein (336aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=15190304 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=15190304 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_14
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

10595..12538
DNA (1944bp) protein (648aa)
Phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Phenylalanine--tRNA ligase beta subunit n=1 Tax=uncultured bacterium RepID=K1XEY0_9BACT
Phenylalanine--tRNA ligase beta subunit n=1 Tax=uncultured bacterium RepID=K1XEY0_9BACT
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_15
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

12700..14634
DNA (1935bp) protein (645aa)
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B (EC:5.99.1.3)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_16
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

14741..14929
DNA (189bp) protein (63aa)
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=15190201 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=15190201 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_17
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

14930..15487
DNA (558bp) protein (186aa)
Transcription termination/antitermination protein NusG n=1 Tax=uncultured bacterium RepID=K1XGH9_9BACT
Transcription termination/antitermination protein NusG n=1 Tax=uncultured bacterium RepID=K1XGH9_9BACT
nusG; transcription antitermination factor Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
nusG; transcription antitermination factor Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_18
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists


15496..15918
DNA (423bp) protein (141aa)
50S ribosomal protein L11 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
50S ribosomal protein L11 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
50S ribosomal protein L11 id=3152102 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
50S ribosomal protein L11 id=3152102 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_5773_19
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

15925..16458
DNA (534bp) protein (178aa)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Thymidylate kinase id=1987545 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Thymidylate kinase id=1987545 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Displaying 19 items

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