ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1..1302)
DNA (1302bp) protein (434aa)
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=5803436 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (EC:6.3.2.10)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1572..3293)
DNA (1722bp) protein (574aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] id=5803435 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidoglycan glycosyltransferase (EC:2.4.1.129)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3306..3626)
DNA (321bp) protein (107aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5803434 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3623..4525)
DNA (903bp) protein (301aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-); K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYG7_9BACT
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4550..4987)
DNA (438bp) protein (146aa)
cell division protein MraZ; K03925 MraZ protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Protein MraZ id=5011448 bin=GWA2_Ignavibacteriae_54_16_partial species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
cell division protein MraZ
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4978..5190)
DNA (213bp) protein (71aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(5479..6942)
DNA (1464bp) protein (488aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C5D03
lysyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7104..7574)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI000380D2AE
transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
greA; transcription elongation factor GreA
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7775..8041
DNA (267bp) protein (89aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8361..10052)
DNA (1692bp) protein (564aa)
putative penicillin-binding protein; K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
penicillin-binding protein 2; K05515 penicillin-binding protein 2 id=5803382 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative penicillin-binding protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10058..10294)
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10514..10798)
DNA (285bp) protein (95aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10788..11594)
DNA (807bp) protein (269aa)
Rod shape-determining protein MreC Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Rod shape-determining protein MreC id=5803380 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_14
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11572..12627)
DNA (1056bp) protein (352aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=5803379 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rod shape-determining protein MreB
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(12990..14240)
DNA (1251bp) protein (417aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Proline-tRNA ligase n=1 Tax=uncultured bacterium RepID=K2EZK3_9BACT
Prolyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_16
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14551..15618)
DNA (1068bp) protein (356aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] id=5227116 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
membrane-associated zinc metalloprotease
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15886..16434)
DNA (549bp) protein (183aa)
Ribosome recycling factor Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Frr; K02838 ribosome recycling factor id=5803375 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ribosome recycling factor
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_18
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16498..16647
DNA (150bp) protein (50aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_19
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16657..17334)
DNA (678bp) protein (226aa)
DNA polymerase III delta prime subunit; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
holB; DNA polymerase III, delta prime subunit (EC:2.7.7.7)
DNA polymerase III, delta' subunit id=1903434 bin=GWD2_Nitrospirae-related_57_8 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_23299_20
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17436..18449)
DNA (1014bp) protein (338aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
id=5227119 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rod shape-determining protein MreB
Displaying 20 items

View Taxonomy