Alias: ACD11_475.63843.30
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD11_15_31
uncultured bacterium, Bacteria
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Not on your lists |
comp(32481..34934)
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DNA gyrase subunit A
DNA gyrase subunit A
DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017435BD (db=UNIREF evalue=0.0 bit_score=864.0 identity=56.12 coverage=98.1662591687042)
seg (db=Seg db_id=seg from=621 to=632)
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ACD11_15_32
uncultured bacterium, Bacteria
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Not on your lists |
comp(34959..35108)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
Uncharacterized protein {ECO:0000313|EMBL:EKE15645.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_33
uncultured bacterium, Bacteria
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Not on your lists |
comp(35132..35791)
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Zn-dependent hydrolase
coiled-coil (db=Coil db_id=coil from=199 to=220 evalue=NA)
seg (db=Seg db_id=seg from=198 to=212)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=171 evalue=7.5e-23)
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ACD11_15_34
uncultured bacterium, Bacteria
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Not on your lists |
36214..37557
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30S ribosomal protein S1
RNA binding S1 domain protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22D3 (db=UNIREF evalue=2.0e-65 bit_score=254.0 identity=42.03 coverage=76.7857142857143)
seg (db=Seg db_id=seg from=14 to=45)
seg (db=Seg db_id=seg from=193 to=202)
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ACD11_15_35
uncultured bacterium, Bacteria
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Not on your lists |
37706..38263
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cytidylate kinase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=181 evalue=5.2e-20)
cyt_kin_arch: putative cytidylate kinase (db=HMMTigr db_id=TIGR02173 from=1 to=181 evalue=5.7e-14 interpro_id=IPR011892 interpro_description=Cytidylate kinase, putative GO=Molecular Function: cytidylate kinase activity (GO:0004127), Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=184 evalue=4.3e-09)
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ACD11_15_36
uncultured bacterium, Bacteria
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Not on your lists |
38271..39248
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tRNA(Ile)-lysidine synthetase
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
seg (db=Seg db_id=seg from=216 to=236)
seg (db=Seg db_id=seg from=292 to=303)
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ACD11_15_37
uncultured bacterium, Bacteria
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Not on your lists |
39273..41117
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ftsH; cell division protein FtsH (EC:3.4.24.-)
ftsH; cell division protein FtsH (EC:3.4.24.-)
ATP-dependent metalloprotease FtsH n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGB2_THET1 (db=UNIREF evalue=4.0e-164 bit_score=582.0 identity=55.63 coverage=92.1951219512195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
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ACD11_15_38
uncultured bacterium, Bacteria
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Not on your lists |
41142..42077
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seg (db=Seg db_id=seg from=290 to=306)
seg (db=Seg db_id=seg from=213 to=237)
seg (db=Seg db_id=seg from=128 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=267)
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ACD11_15_39
uncultured bacterium, Bacteria
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Not on your lists |
comp(42223..43161)
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seg (db=Seg db_id=seg from=252 to=266)
seg (db=Seg db_id=seg from=212 to=222)
seg (db=Seg db_id=seg from=7 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
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ACD11_15_40
uncultured bacterium, Bacteria
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Not on your lists |
comp(43177..44127)
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yd repeat protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=11 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKE15653.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_41
uncultured bacterium, Bacteria
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Not on your lists |
45849..46487
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Putative uncharacterized protein n=1 Tax=Streptomyces sp. ACTE RepID=D1XQT6_9ACTO (db=UNIREF evalue=2.0e-08 bit_score=62.0 identity=26.42 coverage=68.5446009389671)
Uncharacterized protein {ECO:0000313|EMBL:EKE15654.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_42
uncultured bacterium, Bacteria
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Not on your lists |
46561..48048
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polynucleotide adenylyltransferase
polynucleotide adenylyltransferase
PolyA polymerase n=2 Tax=Brachyspira RepID=C0R197_BRAHW (db=UNIREF evalue=1.0e-94 bit_score=350.0 identity=41.67 coverage=90.1209677419355)
seg (db=Seg db_id=seg from=471 to=491)
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ACD11_15_43
uncultured bacterium, Bacteria
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Not on your lists |
48287..49066
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iclR helix-turn-helix domain protein
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=2.0e-26 bit_score=123.0 identity=28.63 coverage=91.9230769230769)
TrmB (db=HMMPfam db_id=PF01978 from=16 to=78 evalue=6.2e-12 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=108 evalue=4.0e-09)
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ACD11_15_44
uncultured bacterium, Bacteria
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Not on your lists |
49089..49493
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49089..49493 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE15657.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_45
uncultured bacterium, Bacteria
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Not on your lists |
49588..50523
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Putative uncharacterized protein n=1 Tax=Frankia sp. EUN1f RepID=D3D7K2_9ACTO (db=UNIREF evalue=3.0e-08 bit_score=62.8 identity=35.59 coverage=34.9358974358974)
Uncharacterized protein {ECO:0000313|EMBL:EKE15658.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_46
uncultured bacterium, Bacteria
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Not on your lists |
comp(50699..51436)
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transcriptional regulator TrmB (db=KEGG evalue=4.0e-09 bit_score=65.1 identity=24.29 coverage=95.5284552845528)
TrmB (db=HMMPfam db_id=PF01978 from=7 to=68 evalue=1.7e-09 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=100 evalue=1.4e-07)
transcriptional regulator TrmB alias=ACD11_475.63843.30G0046,ACD11_475.63843.30_46,ACD11_C00015G00046 id=3171 tax=ACD11 species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
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ACD11_15_47
uncultured bacterium, Bacteria
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Not on your lists |
51561..52244
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
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ACD11_15_48
uncultured bacterium, Bacteria
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Not on your lists |
52509..53252
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hypothetical protein
Similar to the Nter part of tr|Q10YE3|Q10YE3_TRIEI DNA binding domain n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YGC7_MICAE (db=UNIREF evalue=2.0e-09 bit_score=66.2 identity=61.22 coverage=19.3548387096774)
MerR (db=HMMPfam db_id=PF00376 from=8 to=43 evalue=2.0e-11 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=4 to=55 evalue=1.5e-10 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
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ACD11_15_49
uncultured bacterium, Bacteria
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Not on your lists |
53263..53559
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53263..53559 + (rbs_motif=TAAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15606.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_50
uncultured bacterium, Bacteria
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Not on your lists |
53617..55776
|
Strongly similar to ATP-dependent DNA helicase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXL3_9BACT (db=UNIREF evalue=0.0 bit_score=639.0 identity=47.32 coverage=97.2222222222222)
ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
seg (db=Seg db_id=seg from=609 to=621)
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ACD11_15_51
uncultured bacterium, Bacteria
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Not on your lists |
55834..56385
|
putative nucleotidyltransferase
NTP_transf_2 (db=HMMPfam db_id=PF01909 from=91 to=154 evalue=1.5e-11 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=74 to=175 evalue=1.3e-09)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=9 to=96 evalue=7.9e-06)
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ACD11_15_52
uncultured bacterium, Bacteria
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Not on your lists |
56366..56827
|
hypothetical protein
HEPN (db=HMMPfam db_id=PF05168 from=31 to=138 evalue=8.2e-13 interpro_id=IPR007842 interpro_description=HEPN)
hypothetical protein alias=ACD11_475.63843.30G0052,ACD11_475.63843.30_52,ACD11_C00015G00052 id=3162 tax=ACD11 species=Methanocella arvoryzae genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE15609.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_53
uncultured bacterium, Bacteria
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Not on your lists |
comp(56908..57843)
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=31 to=47)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=65 to=310 evalue=2.3e-38)
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ACD11_15_54
uncultured bacterium, Bacteria
|
Not on your lists |
57858..58598
|
transcriptional regulator TrmB
TrmB (db=HMMPfam db_id=PF01978 from=7 to=74 evalue=2.9e-15 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=96 evalue=5.8e-10)
transcriptional regulator, TrmB alias=ACD11_C00015G00054,ACD11_475.63843.30G0054,ACD11_475.63843.30_54 id=3150 tax=ACD11 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
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ACD11_15_55
uncultured bacterium, Bacteria
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Not on your lists |
58613..58933
|
O-6-methylguanine DNA methyltransferase
MGMT (db=PatternScan db_id=PS00374 from=69 to=75 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
DNA_binding_1 (db=HMMPfam db_id=PF01035 from=21 to=100 evalue=1.8e-27 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10815 from=13 to=98 evalue=4.9e-26 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
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ACD11_15_56
uncultured bacterium, Bacteria
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Not on your lists |
59305..60345
|
RNA-directed DNA polymerase from retron Mx162-RT n=2 Tax=Myxococcus xanthus RepID=RT16_MYXXA (db=UNIREF evalue=1.0e-15 bit_score=87.4 identity=26.26 coverage=72.6224783861671)
RNA-directed DNA polymerase (db=KEGG evalue=7.0e-15 bit_score=85.1 identity=27.84 coverage=68.299711815562)
RVT_1 (db=HMMPfam db_id=PF00078 from=33 to=249 evalue=2.5e-11 interpro_id=IPR000477 interpro_description=RNA-directed DNA polymerase (reverse transcriptase) GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
RNADNAPOLMS (db=FPrintScan db_id=PR00866 from=258 to=264 evalue=7.8e-05 interpro_id=IPR000123 interpro_description=RNA-directed DNA polymerase (reverse transcriptase), msDNA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
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ACD11_15_57
uncultured bacterium, Bacteria
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Not on your lists |
60578..61705
|
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W6F3_DYAFD (db=UNIREF evalue=5.0e-105 bit_score=384.0 identity=51.61 coverage=98.1382978723404)
AAA+ superfamily ATPase
AAA+ superfamily ATPase
coiled-coil (db=Coil db_id=coil from=187 to=208 evalue=NA)
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ACD11_15_58
uncultured bacterium, Bacteria
|
Not on your lists |
61746..62045
|
61746..62045 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15602.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD11_15_59
uncultured bacterium, Bacteria
|
Not on your lists |
62280..63212
|
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
PSI_RLU (db=PatternScan db_id=PS01129 from=137 to=151 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=8 to=310 evalue=8.8e-64 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=3 to=280 evalue=2.2e-59)
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ACD11_15_60
uncultured bacterium, Bacteria
|
Not on your lists |
63336..63806
|
50S ribosomal protein L19
seg (db=Seg db_id=seg from=113 to=156)
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=83 to=98 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=3 to=109 evalue=1.9e-34 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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