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CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_1
GWE1_Berkelbacteria_39_12, Berkelbacteria, Bacteria

Not on your lists


comp(241..1569)
DNA (1329bp) protein (443aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] bin=GWE1_Berkelbacteria_39_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
glycyl-tRNA synthetase
Tax=GWE1_Berkelbacteria_39_12
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_2
GWA1_Berkelbacteria_39_10_partial, Berkelbacteria, Bacteria

Not on your lists

comp(1813..2901)
DNA (1089bp) protein (363aa)
alr; alanine racemase Alr (EC:5.1.1.1)
Alanine racemase {ECO:0000313|EMBL:KKQ91035.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_39_10.;"
Alanine racemase bin=GWB1_Berkelbacteria_38_5 species=Methanococcus maripaludis genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_3
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

comp(2917..3657)
DNA (741bp) protein (247aa)
recO; recombination protein RecO; K03584 DNA repair protein RecO (recombination protein O) bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
DNA repair protein RecO
Tax=RBG_13_Berkelbacteria_40_8_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_4
R_OP11_Woesebacteria_38_26b, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(3688..4425)
DNA (738bp) protein (246aa)
glmU; UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.3.1.157 2.7.7.23)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase Tax=Bergeyella zoohelcum RepID=K1LN79_9FLAO bin=GWF1_OP11_31_35_complete species=Bergeyella zoohelcum genus=Bergeyella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26b_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_5

Not on your lists

comp(4437..5270)
DNA (834bp) protein (278aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036A1C0A
DNA-formamidopyrimidine glycosylase {ECO:0000313|EMBL:KKT26776.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_9b.;"
formamidopyrimidine-DNA glycosylase Fpg
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_6
GWE1_Berkelbacteria_39_12, Berkelbacteria, Bacteria

Not on your lists

comp(5589..6347)
DNA (759bp) protein (253aa)
hypothetical protein bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Tax=GWE1_Berkelbacteria_39_12
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_7
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6658..11976)
DNA (5319bp) protein (1773aa)
Putative uncharacterized protein bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_9
unknown

Not on your lists

comp(12196..12267)
DNA (72bp)
transferRNA Glu
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_8
unknown

Not on your lists

comp(12839..12909)
DNA (71bp)
transferRNA His
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_8
R_RIF_OP11_02_38_20, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(12935..13288)
DNA (354bp) protein (118aa)
S23 ribosomal protein Tax=uncultured bacterium RepID=K2BX04_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_02_38_20_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_7
unknown

Not on your lists

comp(13432..13504)
DNA (73bp)
transferRNA Arg
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_6
unknown

Not on your lists

comp(13589..13659)
DNA (71bp)
transferRNA Gly
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_5
unknown

Not on your lists

comp(13771..13844)
DNA (74bp)
transferRNA Pro
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_9
Berkelbacteria bacterium GW2011_GWB1_38_5, Berkelbacteria, Bacteria

Not on your lists

comp(13896..15473)
DNA (1578bp) protein (526aa)
hypothetical protein cdiviTM7_00321 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKQ74408.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWB1_38_5.;"
hypothetical protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_10
unknown

Not on your lists

comp(15475..15777)
DNA (303bp) protein (101aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_4
unknown

Not on your lists

comp(15863..15934)
DNA (72bp)
transferRNA Thr
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_3
unknown

Not on your lists

comp(15946..16017)
DNA (72bp)
transferRNA Gly
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_11
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

comp(16096..17331)
DNA (1236bp) protein (412aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000368B626
DNA and RNA helicase
Tax=RBG_13_Berkelbacteria_40_8_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_12
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

Not on your lists

17429..17767
DNA (339bp) protein (113aa)
PadR family transcripitonal regulator Tax=Thalassospira lucentensis RepID=UPI0003B70E82
Transcriptional regulator, PadR family {ECO:0000313|EMBL:KKQ90326.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_38_9.;"
PadR family transcriptional regulator
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_13

Not on your lists

comp(17781..18641)
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2A3W3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD56111.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
molecular chaperone
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_14

Not on your lists

comp(19069..19431)
DNA (363bp) protein (121aa)
LAGLIDADG homing endonuclease {ECO:0000313|EMBL:KKU84785.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_8b.;"
Homing endonuclease bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_15
CG_Berkel_01, Berkelbacteria, Bacteria

Not on your lists

comp(20726..21181)
DNA (456bp) protein (152aa)
Homing endonuclease, LAGLIDADG family, 23S rRNA group I intron Tax=Coxiella burnetii RepID=A9NAI3_COXBR
homing endonuclease, 23S rRNA intron
Tax=CG_Berkel_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_16
RLO_OD1_Magasanikbacteria_43_12, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(21562..21993)
DNA (432bp) protein (144aa)
ORF142 bin=GWC2_OD1_43_27 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Magasanikbacteria_43_12_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_17
GWA2_OD1_38_13, Parcubacteria, Bacteria

Not on your lists

comp(24519..26069)
DNA (1551bp) protein (517aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YKT2_9BACT
tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313|EMBL:KKQ53651.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_38_13.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_18
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

comp(26115..26792)
DNA (678bp) protein (226aa)
small-conductance mechanosensitive ion channel bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
small-conductance mechanosensitive ion channel
Tax=RBG_13_Berkelbacteria_40_8_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_2
unknown

Not on your lists

comp(27089..27160)
DNA (72bp)
transferRNA Ala
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_19
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

comp(27197..27397)
DNA (201bp) protein (67aa)
hypothetical protein bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Tax=RBG_13_Berkelbacteria_40_8_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_20

Not on your lists

comp(27376..27846)
DNA (471bp) protein (157aa)
transmembrane_regions 7..29 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD55958.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_trna_1
unknown

Not on your lists

comp(28076..28147)
DNA (72bp)
transferRNA Ile
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_585_c_16S_1
unknown

Not on your lists

comp(28427..30765)
DNA (2339bp)
16S ribosomal RNA (16S rRNA)
Displaying items 1-30 of 39 in total

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