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gwf1_scaffold_10431

Alias: WS6_GWF1_33_233_26

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_10431_1

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98..688
DNA (591bp) protein (197aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSZ2_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKP54462.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
ECF subfamily RNA polymerase sigma factor
seg (db=Seg db_id=seg from=3 to=17)
gwf1_scaffold_10431_2
WS6_GWF1_33_233, WS6, Bacteria

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672..1391
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSZ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP43922.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=3 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
gwf1_scaffold_10431_3
WS6_GWF1_33_233, WS6, Bacteria

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1498..1887
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43923.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=5 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
gwf1_scaffold_10431_4

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comp(1963..2967)
DNA (1005bp) protein (335aa)
rlmN2; ribosomal RNA large subunit methyltransferase N 2 (EC:2.1.1.- 2.1.1.192)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB37_9FIRM
Putative dual-specificity RNA methyltransferase RlmN {ECO:0000313|EMBL:KKP54465.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6
(db=HMMPfam db_id=PF04055 from=96 to=259 evalue=1.8e-13 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
gwf1_scaffold_10431_5
WS6_GWF1_33_233, WS6, Bacteria

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3008..3430
DNA (423bp) protein (141aa)
Ribulose bisophosphate carboxylase, ribulose-bisphosphate carboxylase large chain {ECO:0000313|EMBL:KKP43925.1}; EC=4.1.1.39 {ECO:0000313|EMBL:KKP43925.1};; TaxID=1619096 species="Bacteria; candidate
Ribulose bisphosphate carboxylase n=2 Tax=Desulfurococcus RepID=B8D5T5_DESK1
rbcL; ribulose bisophosphate carboxylase
RuBisCO, large subunit, small (N-terminal) domain (db=superfamily db_id=SSF54966 from=36 to=137 evalue=3.9e-20 interpro_id=IPR017443 interpro_description=Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO=Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
Curated: >RuBisCO MAVQLNYIAPKGWEPPMDGRDYLITYLDIELADGIPDEKFRDAAASCAAESSTGTWTKVYAGKDSGIKMA EKMKAVAYDLNPEKKTFKIAYRSDLFEEGNMAGLLAGVAGNIDSMKMLKAFRLIDIKFPKNIVNSFPGPQ FGIDGVRKFMEIERGPMLCTVPKPKVGRTALEQAQLAKVLFTAAKGEFQGIKDDENLTSLYFNTFEDRCK KVHAVQREIEQKSGRKKFYLCNITHSDLDIMLERADMIKENGGRWLMMDAVTTGFTAVQTVRKHNPGLAI HAHRAMHGLLDRESGPGVHDGGKIVDFSMSMVVIAKIMRLLGVDSLHGGAPKTKMENYGEPKLVQEALQE DITPATDMTLGQNWYGMKGVWHVASGGLHAGTIGDSITQLGENLIIQAGGGVLGHPWGIEAGVEAVVQAR DLAMAKGDIKAWIIDNPESALAKAAQHWGFDPRIVY* Jill Banfield (8/4/14)
gwf1_scaffold_10431_6
WS6_GWF1_33_233, WS6, Bacteria

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3462..4001
DNA (540bp) protein (180aa)
Ribulose bisphosphate carboxylase, type III, ribulose-bisphosphate carboxylase large chain {ECO:0000313|EMBL:KKP43926.1}; EC=4.1.1.39 {ECO:0000313|EMBL:KKP43926.1};; TaxID=1619096 species="Bacteria; c
Ribulose bisophosphate carboxylase (Fragment) n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QT64_9EURY
ribulose bisphosphate carboxylase, type III
RuBisCo, C-terminal domain (db=superfamily db_id=SSF51649 from=13 to=156 evalue=3.4e-33 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
gwf1_scaffold_10431_7
WS6_GWF1_33_233, WS6, Bacteria

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4225..5214
DNA (990bp) protein (330aa)
Prolyl-tRNA synthetase, prolyl-tRNA synthetase {ECO:0000313|EMBL:KKP43927.1}; EC=6.1.1.15 {ECO:0000313|EMBL:KKP43927.1};; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" s
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=7 Tax=Myroides RepID=H1GR10_9FLAO rbh
seg (db=Seg db_id=seg from=293 to=308)
Displaying 7 items

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