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RAAC4_OD1_1

Alias: RAAC4_OD1

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Displaying items 1-30 of 724 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RAAC4_OD1_1_1
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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3..1940
DNA (1938bp) protein (646aa)
putative glycosyl transferase
Uncharacterized protein {ECO:0000313|EMBL:ETB63550.1}; Flags: Fragment;; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
May be two proteins predicted as 1 because at the edge of the contig. Rose Kantor (10/8/13)
This protein has an N-terminal glycosyl transferase group 2 domain and a C-terminal glycosyl transferase group 1 domain. Rose Kantor (10/8/13)
RAAC4_OD1_1_2
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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1988..2950
DNA (963bp) protein (321aa)
Glycosyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IRK5_9PLAN
Glycosyltransferase {ECO:0000313|EMBL:ETB63551.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
glycosyl transferase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=281 to=303)
RAAC4_OD1_1_3
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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3260..3760
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63552.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
hypothetical protein
(db=HMMPfam db_id=PF01936 from=10 to=128 evalue=2.6e-19 interpro_id=IPR021139 interpro_description=NYN domain, limkain-b1-type)
RAAC4_OD1_1_4
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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comp(3893..4147)
DNA (255bp) protein (85aa)
GIY-YIG nuclease superfamily protein n=1 Tax=Cecembia lonarensis LW9 RepID=K1LZY8_9BACT
GIY-YIG nuclease superfamily protein {ECO:0000313|EMBL:ETB63553.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
excinuclease ABC C subunit domain-containing protein
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=73 evalue=3.0e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
RAAC4_OD1_1_5
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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comp(4166..5473)
DNA (1308bp) protein (436aa)
Putative sugar transferase n=1 Tax=planctomycete KSU-1 RepID=I3IJY8_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:ETB63554.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
RAAC4_OD1_1_6
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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5899..6384
DNA (486bp) protein (162aa)
50S ribosomal protein L10 n=1 Tax=Lactobacillus versmoldensis KCTC 3814 RepID=UPI0002491362
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
rplJ; 50S ribosomal protein L10
coiled-coil (db=Coil db_id=coil from=4 to=25 evalue=NA)
RAAC4_OD1_1_7
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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6409..6804
DNA (396bp) protein (132aa)
50S ribosomal protein L7/L12 n=1 Tax=Stomatobaculum longum RepID=H1HTV5_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
rplL; 50S ribosomal protein L7/L12
seg (db=Seg db_id=seg from=28 to=39)
RAAC4_OD1_1_8
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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7055..7669
DNA (615bp) protein (205aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63557.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
RAAC4_OD1_1_9
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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7806..8498
DNA (693bp) protein (231aa)
Small-conductance mechanosensitive ion channel-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4T5_RAMTT
Small-conductance mechanosensitive ion channel-like protein {ECO:0000313|EMBL:ETB63558.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
small-conductance mechanosensitive ion channel
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
RAAC4_OD1_5S_rRNA
unknown

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12584..12690
DNA (107bp)

This feature has no annotations

RAAC4_OD1_1_10
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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12821..13393
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63559.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=18 to=26)
RAAC4_OD1_1_11
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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13452..14228
DNA (777bp) protein (259aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63560.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=12 to=32)
RAAC4_OD1_1_12
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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14233..15372
DNA (1140bp) protein (380aa)
Rod shape-determining protein RodA n=6 Tax=Veillonella RepID=D1BNE5_VEIPT
Uncharacterized protein {ECO:0000313|EMBL:ETB63561.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
rod shape-determining protein RodA
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
RAAC4_OD1_1_13
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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15483..16313
DNA (831bp) protein (277aa)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Nitratiruptor sp. (strain SB155-2) RepID=FOLD_NITSB
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
seg (db=Seg db_id=seg from=143 to=157)
RAAC4_OD1_1_14
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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16316..16840
DNA (525bp) protein (175aa)
Phosphatase n=3 Tax=Clostridium acetobutylicum RepID=F0KBE9_CLOAE
Phosphatase {ECO:0000313|EMBL:ETB63563.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
bcrC; phosphatase
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
RAAC4_OD1_1_15
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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16999..18414
DNA (1416bp) protein (472aa)
Preprotein translocase subunit SecD n=1 Tax=sediment metagenome RepID=D9PI65_9ZZZZ rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
protein-export membrane protein SecD
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
RAAC4_OD1_1_16
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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18438..19325
DNA (888bp) protein (296aa)
Protein-export membrane protein SecF n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SBB5_9CHLR
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
Protein translocase subunit SecF
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
RAAC4_OD1_1_17
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

19440..20006
DNA (567bp) protein (189aa)
LemA-like protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B255F
LemA-like protein {ECO:0000313|EMBL:ETB63566.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
RAAC4_OD1_1_18
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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20009..20902
DNA (894bp) protein (298aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;
htpX; putative protease HtpX (EC:3.4.24.-)
Protease HtpX homolog n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GJ20_CALEA
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
RAAC4_OD1_1_T19
unknown

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21012..21098
DNA (87bp)
transferRNA
RAAC4_OD1_1_19
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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21170..22234
DNA (1065bp) protein (355aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63568.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
coiled-coil (db=Coil db_id=coil from=213 to=234 evalue=NA)
RAAC4_OD1_1_20
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

22231..22794
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63569.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
seg (db=Seg db_id=seg from=140 to=153)
RAAC4_OD1_1_21
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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comp(22796..24118)
DNA (1323bp) protein (441aa)
Recombinase n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LVL3_HIPMA
Recombinase {ECO:0000313|EMBL:ETB63570.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
recombinase
seg (db=Seg db_id=seg from=424 to=437)
RAAC4_OD1_1_22
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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24933..25766
DNA (834bp) protein (278aa)
Putative peptidoglycan binding domain protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2FTR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETB63571.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
cell wall-associated hydrolase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
RAAC4_OD1_1_23
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

25812..26783
DNA (972bp) protein (324aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63572.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
RAAC4_OD1_1_24
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

26862..27557
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V654_ARCNC
Uncharacterized protein {ECO:0000313|EMBL:ETB63573.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
RAAC4_OD1_1_25
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

27564..27731
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63574.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=13 to=34)
RAAC4_OD1_1_26
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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27738..28427
DNA (690bp) protein (230aa)
Alternative oxidase/tellurite resistance protein TehB n=1 Tax=Legionella longbeachae D-4968 RepID=D1RFB1_LEGLO
Alternative oxidase/tellurite resistance protein TehB {ECO:0000313|EMBL:ETB63575.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
hypothetical protein
seg (db=Seg db_id=seg from=29 to=49)
RAAC4_OD1_1_27
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

Not on your lists

28557..29321
DNA (765bp) protein (255aa)
Uncharacterized protein {ECO:0000313|EMBL:ETB63576.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=7 to=24)
RAAC4_OD1_1_28
Parcubacteria bacterium RAAC4_OD1_1, Parcubacteria, Bacteria

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29411..30199
DNA (789bp) protein (263aa)
glutamate racemase n=1 Tax=Pedobacter agri PB92 RepID=UPI00029A5638
Glutamate racemase {ECO:0000313|EMBL:ETB63577.1}; TaxID=1394712 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium RAAC4_OD1_1.;"
murI; glutamate racemase
no description (db=Gene3D db_id=G3DSA:3.40.50.1860 from=5 to=153 evalue=1.5e-26 interpro_id=IPR001920 interpro_description=Asp/Glu racemase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
Displaying items 1-30 of 724 in total

View Taxonomy