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13_1_20cm_4_scaffold_577

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_577_1
unknown

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comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_20cm_4_scaffold_577_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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536..2245
DNA (1710bp) protein (570aa)
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type IV-A pilus assembly ATPase PilB id=2008269 bin=GWB2_Proteobacteria_55_19 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
type II secretion system protein E
13_1_20cm_4_scaffold_577_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2317..3291
DNA (975bp) protein (325aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein; K02669 twitching motility protein PilT Tax=RBG_16_Gemmatimonadetes_66_8_curated
twitching motility protein
13_1_20cm_4_scaffold_577_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3315..4523
DNA (1209bp) protein (403aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type II secretion system F domain-containing protein
13_1_20cm_4_scaffold_577_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4662..6317
DNA (1656bp) protein (552aa)
two-component histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase
13_1_20cm_4_scaffold_577_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6317..7723
DNA (1407bp) protein (469aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
sigma-54 factor interaction domain-containing protein
13_1_20cm_4_scaffold_577_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7782..8411
DNA (630bp) protein (210aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal RNA adenine methylase transferase id=12554429 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative pristinamycin I synthase 3
13_1_20cm_4_scaffold_577_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8411..9136
DNA (726bp) protein (242aa)
glycosyl transferase n=1 Tax=Spirulina subsalsa RepID=UPI00031BACE1
glycosyl transferase family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
glycosyl transferase family 2
13_1_20cm_4_scaffold_577_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9178..10617
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IR68_9PLAN
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_577_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10595..12106
DNA (1512bp) protein (504aa)
Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UT00_MONBE
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_577_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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12103..13626
DNA (1524bp) protein (508aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JE21_ANAD2
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_577_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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13840..14061
DNA (222bp) protein (74aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
African swine fever virus j13L
13_1_20cm_4_scaffold_577_13
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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14143..15051
DNA (909bp) protein (303aa)
Transcriptional regulator n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WH83_9CYAN
LysR family transcriptional regulator {ECO:0000313|EMBL:AGY59358.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.
transcriptional regulator
13_1_20cm_4_scaffold_577_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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15270..15458
DNA (189bp) protein (63aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
African swine fever virus j13L
Displaying 14 items

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