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13_1_40cm_3_scaffold_2242

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2242_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..965)
DNA (963bp) protein (321aa)
atpD; ATP synthase beta chain (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
atpD; ATP synthase beta chain (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A698_GEMAT
13_1_40cm_3_scaffold_2242_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1042..1923)
DNA (882bp) protein (294aa)
atpG; F0F1 ATP synthase subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP synthase gamma chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ATPG_GEMAT
ATP synthase gamma chain
13_1_40cm_3_scaffold_2242_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(1923..3521)
DNA (1599bp) protein (533aa)
atpA; ATP synthase alpha chain (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATP synthase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A696_GEMAT rbh
ATP synthase subunit alpha
13_1_40cm_3_scaffold_2242_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3576..4292)
DNA (717bp) protein (239aa)
AraC family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A695_GEMAT
AraC family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
AraC family transcriptional regulator
13_1_40cm_3_scaffold_2242_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(4289..4762)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A694_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NUDIX hydrolase
13_1_40cm_3_scaffold_2242_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4883..5890)
DNA (1008bp) protein (336aa)
Putative transporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH1_GEMAT
putative transporter; K02067 putative ABC transport system substrate-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative transporter
13_1_40cm_3_scaffold_2242_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5887..6612)
DNA (726bp) protein (242aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A693_GEMAT
putative ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_2242_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6609..7301)
DNA (693bp) protein (231aa)
Putative transporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH0_GEMAT
putative transporter; K02066 putative ABC transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative transporter
13_1_40cm_3_scaffold_2242_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7443..8423)
DNA (981bp) protein (327aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A692_GEMAT
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor
13_1_40cm_3_scaffold_2242_trna_1
unknown

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8699..8771
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_2242_trna_2
unknown

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8801..8874
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_2242_trna_3
unknown

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8962..9035
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_2242_trna_4
unknown

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9040..9113
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_2242_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9079..10842)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJ95_9BACE rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC94050.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
13_1_40cm_3_scaffold_2242_11
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10832..12649)
DNA (1818bp) protein (606aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A0495
Uncharacterized protein {ECO:0000313|EMBL:KIC94210.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
13_1_40cm_3_scaffold_2242_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12649..14301)
DNA (1653bp) protein (551aa)
Putative outer membrane protein probably involved in nutrient binding n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6JFW8_9PORP rbh
Starch-binding protein {ECO:0000313|EMBL:KIC94051.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter
hypothetical protein
13_1_40cm_3_scaffold_2242_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14316..17777)
DNA (3462bp) protein (1154aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=E1YSF6_9PORP rbh
Collagen-binding protein {ECO:0000313|EMBL:KIC94052.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibact
hypothetical protein
Displaying 17 items

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