ggKbase home page

13_1_40cm_3_scaffold_4803

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4803_1
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(55..1641)
DNA (1587bp) protein (529aa)
carbohydrate-binding protein SusD n=1 Tax=Spirosoma panaciterrae RepID=UPI00037540C8
glycan metabolism protein
Glycan metabolism protein {ECO:0000313|EMBL:AIZ65479.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
13_1_40cm_3_scaffold_4803_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1657..3468)
DNA (1812bp) protein (604aa)
TonB-dependent receptor n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYU8_DYAFD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACT93453.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
13_1_40cm_3_scaffold_4803_3
unknown

Not on your lists

3479..4966
DNA (1488bp) protein (496aa)

This feature has no annotations

13_1_40cm_3_scaffold_4803_4
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4905..5927)
DNA (1023bp) protein (341aa)
Anti-FecI sigma factor, FecR n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHL0_RHOM4
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACY47968.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
13_1_40cm_3_scaffold_4803_5
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5960..6520)
DNA (561bp) protein (187aa)
RNA polymerase sigma-70 factor id=3870044 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWC2_Bacteroidetes_46_850_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_3_scaffold_4803_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6800..8227
DNA (1428bp) protein (476aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator id=12554452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
two-component hybrid sensor and regulator
13_1_40cm_3_scaffold_4803_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

8241..10100
DNA (1860bp) protein (620aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT id=5223291 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter transmembrane region
13_1_40cm_3_scaffold_4803_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10163..10363)
DNA (201bp) protein (67aa)
Cold shock protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Q1_GEMAT
Cold-shock protein DNA-binding protein
Cold-shock protein DNA-binding protein {ECO:0000313|EMBL:AHG89448.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 8 items

View Taxonomy