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13_2_20cm_scaffold_2485

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2485_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..636)
DNA (636bp) protein (212aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB76_GEMAT
menaquinone biosynthesis decarboxylase, SCO4490 family
Menaquinone biosynthesis decarboxylase, SCO4490 family {ECO:0000313|EMBL:AHG91443.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(623..1324)
DNA (702bp) protein (234aa)
ubiE; menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-); K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Demethylmenaquinone methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB77_GEMAT
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
13_2_20cm_scaffold_2485_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1410..1970
DNA (561bp) protein (187aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB78_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
13_2_20cm_scaffold_2485_4
unknown

Not on your lists

2005..2265
DNA (261bp) protein (87aa)

This feature has no annotations

13_2_20cm_scaffold_2485_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2230..2559)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LY40_HALO1
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_2_20cm_scaffold_2485_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2953..4206)
DNA (1254bp) protein (418aa)
Putative multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB83_GEMAT
putative multidrug resistance protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
MATE efflux family protein
13_2_20cm_scaffold_2485_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4269..5648)
DNA (1380bp) protein (460aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator id=12554452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
diguanylate cyclase
13_2_20cm_scaffold_2485_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5769..6545)
DNA (777bp) protein (259aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative uncharacterized protein id=2285677 bin=GWA2_Elusimicrobia_51_34 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
13_2_20cm_scaffold_2485_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6547..7752)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB84_GEMAT
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATPase-like, ParA/MinD
13_2_20cm_scaffold_2485_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10271..10897
DNA (627bp) protein (209aa)
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG89543.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_11
unknown

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10942..12225
DNA (1284bp) protein (428aa)

This feature has no annotations

13_2_20cm_scaffold_2485_12
unknown

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comp(12296..12817)
DNA (522bp) protein (174aa)
OmpA/MotB domain protein
13_2_20cm_scaffold_2485_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13041..14072)
DNA (1032bp) protein (344aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
2-oxoglutarate ferredoxin oxidoreductase beta subunit n=1 Tax=uncultured bacterium W5-51b RepID=H9BX70_9BACT
2-oxoacid:ferredoxin oxidoreductase subunit beta
13_2_20cm_scaffold_2485_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14069..15055)
DNA (987bp) protein (329aa)
2-oxoglutarate ferredoxin oxidoreductase alpha subunit n=1 Tax=uncultured bacterium W5-51b RepID=H9BX69_9BACT
pyruvate flavodoxin/ferredoxin oxidoreductase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
13_2_20cm_scaffold_2485_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15052..15879)
DNA (828bp) protein (276aa)
2-oxoglutarate ferredoxin oxidoreductase alpha subunit n=1 Tax=uncultured bacterium W5-51b RepID=H9BX69_9BACT
pyruvate flavodoxin/ferredoxin oxidoreductase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
2-oxoglutarate ferredoxin oxidoreductase subunit alpha
13_2_20cm_scaffold_2485_16
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16107..17579
DNA (1473bp) protein (491aa)
uxaB3; tagaturonate reductase (EC:1.1.1.58)
Tagaturonate reductase {ECO:0000313|EMBL:CCH01731.1}; EC=1.1.1.58 {ECO:0000313|EMBL:CCH01731.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" s
Tagaturonate reductase n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KC78_9BACT rbh
13_2_20cm_scaffold_2485_17

Not on your lists

17582..18247
DNA (666bp) protein (222aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] id=12556858 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48720.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
13_2_20cm_scaffold_2485_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

18244..19233
DNA (990bp) protein (330aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] id=12556857 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PfkB domain-containing protein
13_2_20cm_scaffold_2485_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19230..20276
DNA (1047bp) protein (349aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037C2CFC rbh
Mannonate dehydratase
13_2_20cm_scaffold_2485_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

20273..21583
DNA (1311bp) protein (437aa)
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG87912.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hexuronate transporter; K08191 MFS transporter, ACS family, hexuronate transporter id=12555863 bin=CNBR_ACIDO species=Xanthomonas albilineans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_2_20cm_scaffold_2485_21
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21580..22182
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B366E1
Uncharacterized protein {ECO:0000313|EMBL:EJL28871.1}; Flags: Precursor; Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter
hypothetical protein
13_2_20cm_scaffold_2485_22
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22179..22580
DNA (402bp) protein (134aa)
Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZQN3_9BACT
Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site {ECO:0000313|EMBL:EON76425.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified
FAD dependent oxidoreductase
13_2_20cm_scaffold_2485_23
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22559..23803
DNA (1245bp) protein (415aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG3_RHOM4
glucose-methanol-choline oxidoreductase
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ACY48621.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="R
13_2_20cm_scaffold_2485_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23840..24769
DNA (930bp) protein (310aa)
ABC-type transporter, integral membrane subunit
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG93135.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ribose/xylose/arabinose/galactoside ABC transporter permease id=17279468 bin=RBG_16_Aminicenantes_63_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_2_20cm_scaffold_2485_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24828..25697
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EE525
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:AHG93136.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25694..26509
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C9V5_9FLAO
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AHG93137.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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26513..27388
DNA (876bp) protein (292aa)
2-keto-4-pentenoate hydratase n=1 Tax=Imtechella halotolerans K1 RepID=I0WDD7_9FLAO
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:AHG93138.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27628..28053
DNA (426bp) protein (142aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJG2_9CHLR
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AHG93139.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

28064..29536
DNA (1473bp) protein (491aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM76_ROSCS
Mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:AHG93141.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_2485_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29490..30758
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000379499F
glycoside hydrolase family 29 (alpha-L-fucosidase)
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:AHG93142.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 43 in total

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