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13_1_40cm_scaffold_5217

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5217_1
unknown

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comp(2..106)
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_scaffold_5217_2
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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comp(129..536)
DNA (408bp) protein (136aa)
transmembrane_regions 17..39 Tax=RBG_16_KB1_OP1_55_9_curated
transmembrane_regions 17..39 id=83838 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
13_1_40cm_scaffold_5217_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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655..2313
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABL9_GEMAT
peptidase M14 carboxypeptidase A
Peptidase M14 carboxypeptidase A {ECO:0000313|EMBL:AHG92073.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_5217_4
unknown

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comp(2787..2990)
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_scaffold_5217_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3391..3621
DNA (231bp) protein (77aa)
amino acid permease-associated region
Amino acid permease-associated region {ECO:0000313|EMBL:AHG89012.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
amino acid permease-associated protein; K03294 basic amino acid/polyamine antiporter, APA family id=16791967 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
13_1_40cm_scaffold_5217_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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3618..4598
DNA (981bp) protein (327aa)
amidohydrolase; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Amidohydrolase 2 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QJ8_SOLUE
amidohydrolase 2
13_1_40cm_scaffold_5217_7
unknown

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4631..4795
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_scaffold_5217_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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5010..6254
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV59_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE85585.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
13_1_40cm_scaffold_5217_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

6348..8204
DNA (1857bp) protein (619aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT id=5223291 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter transmembrane region
13_1_40cm_scaffold_5217_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8201..9568
DNA (1368bp) protein (456aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator id=12554452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
diguanylate cyclase
13_1_40cm_scaffold_5217_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9683..10663
DNA (981bp) protein (327aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidoba
Alpha-galactosidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR22_KORVE
alpha-galactosidase
13_1_40cm_scaffold_5217_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

10753..11352
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00035DFEFF
CHRD domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
CHRD domain protein
13_1_40cm_scaffold_5217_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11358..11891
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC68_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein of unknown function DUF2911
13_1_40cm_scaffold_5217_14
CSP1_5_NC10, NC10, Bacteria

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12018..14015
DNA (1998bp) protein (666aa)
putative glutathione-regulated potassium-efflux system; K03455 monovalent cation:H+ antiporter-2, CPA2 family id=14428747 bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
putative glutathione-regulated potassium-efflux system; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=CSP1_5_NC10
Kef-type K+ transport system NAD-binding protein
13_1_40cm_scaffold_5217_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14100..14858
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGX1_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98122.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
13_1_40cm_scaffold_5217_16
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14875..15831
DNA (957bp) protein (319aa)
TonB-dependent receptor n=1 Tax=Leptospira inadai serovar Lyme str. 10 RepID=V6HN35_9LEPT
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHJ95851.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Displaying 16 items

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