ggKbase home page

PLM0_60_b1_sep16_scaffold_1047

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_1047_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3..2846
DNA (2844bp) protein (948aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAH40043.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAH40043.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC16_GEMAT
PLM0_60_b1_sep16_scaffold_1047_2
unknown

Not on your lists

3335..4078
DNA (744bp) protein (248aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_1047_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4104..5012
DNA (909bp) protein (303aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA66_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM0_60_b1_sep16_scaffold_1047_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5028..5375)
DNA (348bp) protein (116aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG87628.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1047_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5465..6151
DNA (687bp) protein (229aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Uridine kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ4_GEMAT
Uridine kinase
PLM0_60_b1_sep16_scaffold_1047_6
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(6057..7352)
DNA (1296bp) protein (432aa)
Uncharacterized protein bin=GWF2_Melioribacter_38_21 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
major facilitator superfamily protein
Tax=GWB2_Ignavibacteria_35_6b_curated
PLM0_60_b1_sep16_scaffold_1047_trna_3
unknown

Not on your lists

comp(7355..7427)
DNA (73bp)
transferRNA Lys
PLM0_60_b1_sep16_scaffold_1047_7
unknown

Not on your lists

7429..7614
DNA (186bp) protein (62aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_1047_trna_2
unknown

Not on your lists

comp(7443..7516)
DNA (74bp)
transferRNA Arg
PLM0_60_b1_sep16_scaffold_1047_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7611..8480)
DNA (870bp) protein (290aa)
D-alanine aminotransferase Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E5R1_9GAMM
aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_1047_9
unknown

Not on your lists

comp(8490..8987)
DNA (498bp) protein (166aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_1047_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9129..9416
DNA (288bp) protein (96aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A633_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90136.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1047_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9473..9841)
DNA (369bp) protein (123aa)
Putative pilin Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin
Putative pilin {ECO:0000313|EMBL:BAH39565.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_1047_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(10136..10609)
DNA (474bp) protein (158aa)
Patatin Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF35_9BACT
patatin
Patatin {ECO:0000313|EMBL:CBE68364.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM0_60_b1_sep16_scaffold_1047_13
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(10822..11574)
DNA (753bp) protein (251aa)
patatin; K07001 NTE family protein bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
patatin
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM0_60_b1_sep16_scaffold_1047_trna_1
unknown

Not on your lists

comp(11689..11762)
DNA (74bp)
transferRNA Pro
PLM0_60_b1_sep16_scaffold_1047_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


comp(11779..12426)
DNA (648bp) protein (216aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
HAM1 protein homolog Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q4_GEMAT
Nucleoside-triphosphatase rdgB
PLM0_60_b1_sep16_scaffold_1047_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12423..13148)
DNA (726bp) protein (242aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Ribonuclease PH Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q3_GEMAT
Ribonuclease PH
PLM0_60_b1_sep16_scaffold_1047_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13135..13395)
DNA (261bp) protein (87aa)
RfaE bifunctional protein, domain II Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK12_KORVE
rfaE bifunctional protein
RfaE bifunctional protein {ECO:0000313|EMBL:AHG90739.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1047_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13625..13981)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_1047_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13975..14469)
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q1_GEMAT
Rare lipoprotein B
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_1047_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14447..15070)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90737.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1047_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15067..15216)
DNA (150bp) protein (50aa)
peptidyl-prolyl cis-trans isomerase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cyclophilin type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Displaying 23 items

View Taxonomy