ggKbase home page

cn_combo_scaffold_233

Alias: GEM22_5

Search features with annotation key words

Displaying items 61-90 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_233_61
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(72761..73036)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTM5_PSEUP
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:AHG93790.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_233_62
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

73219..73878
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIZ7_CHIPD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
cn_combo_scaffold_233_63
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(73979..74974)
DNA (996bp) protein (332aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=24418890 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
cn_combo_scaffold_233_64
unknown

Not on your lists

75229..75681
DNA (453bp) protein (151aa)

This feature has no annotations

cn_combo_scaffold_233_65
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(76037..79552)
DNA (3516bp) protein (1172aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37785.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_233_66
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79887..82103
DNA (2217bp) protein (739aa)
hypothetical protein id=12557664 bin=CNBR_ACIDO species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EIK53266.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutze
hypothetical protein
cn_combo_scaffold_233_67
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(82114..83562)
DNA (1449bp) protein (483aa)
TolB protein n=1 Tax=uncultured Latescibacteria bacterium RepID=Q2YZW0_9BACT
tolB protein; K03641 TolB protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Ig domain protein group 2 domain protein
cn_combo_scaffold_233_68
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

83733..86117
DNA (2385bp) protein (795aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=GWC2_Gemmatimonadetes_71_10_curated
serine/threonine protein kinase id=17439091 bin=RBG_16_Aminicenantes_63_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
protein kinase
cn_combo_scaffold_233_69
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(86204..86803)
DNA (600bp) protein (200aa)
SCO1/SenC family protein; K07152 id=12557585 bin=CNBR_ACIDO species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
electron transport protein SCO1/SenC
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ABU59039.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseif
possibly a cytochrome assembly protein that binds copper Rose Kantor (11/4/14)
cn_combo_scaffold_233_70
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86800..87300)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UCU9_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV18212.1}; Flags: Precursor;; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source
hypothetical protein
possibly copper binding Rose Kantor (11/4/14)
cn_combo_scaffold_233_71
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(87297..88142)
DNA (846bp) protein (282aa)
cytochrome c, class I id=12557587 bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AFM13846.1}; Flags: Precursor;; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATC
cn_combo_scaffold_233_72
unknown

Not on your lists

comp(88443..88895)
DNA (453bp) protein (151aa)

This feature has no annotations

cn_combo_scaffold_233_73
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

89007..89384
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003815549
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
hypothetical protein
cn_combo_scaffold_233_74
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(89391..89846)
DNA (456bp) protein (152aa)
Putative signal-transduction protein with CBS domains n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B15_SOLUE
signal-transduction protein
Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABJ81751.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter
cn_combo_scaffold_233_75
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(89998..93099)
DNA (3102bp) protein (1034aa)
Surface antigen (D15) n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI93_RHOMR
surface antigen (D15)
Surface antigen (D15) {ECO:0000313|EMBL:AEN74149.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="
cn_combo_scaffold_233_76
unknown

Not on your lists

comp(93177..93665)
DNA (489bp) protein (163aa)

This feature has no annotations

cn_combo_scaffold_233_77
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(93906..94421)
DNA (516bp) protein (172aa)
hypothetical membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical membrane protein id=14633016 bin=bin9_gal15 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
hypothetical protein
cn_combo_scaffold_233_78
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94609..95766
DNA (1158bp) protein (386aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Pseudomonas sp. GM48 RepID=J2ZT66_9PSED
sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
cn_combo_scaffold_233_79
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(95808..96515)
DNA (708bp) protein (236aa)
Membrane protein n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9WBI8_9CYAN
Membrane protein {ECO:0000313|EMBL:ESA37476.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
conserved hypothetical integral membrane protein TIGR02206
cn_combo_scaffold_233_80
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

96775..97572
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAR8_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25123.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
cn_combo_scaffold_233_81
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(97678..99066)
DNA (1389bp) protein (463aa)
Putative uncharacterized protein id=4929150 bin=GWC2_Chloroflexi_49_37 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Molybdenum cofactor sulfurase
Tax=BJP_IG2157_Anaerolineales_55_23
cn_combo_scaffold_233_82
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(99157..102537)
DNA (3381bp) protein (1127aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WP9_SOLUE
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABJ85916.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solib
cn_combo_scaffold_233_83
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(102687..104318)
DNA (1632bp) protein (544aa)
phosphoglucomutase n=1 Tax=Novispirillum itersonii RepID=UPI00037FD09D
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:AHG91618.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_233_84
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(104365..104910)
DNA (546bp) protein (182aa)
Putative cytochrome c n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAV5_GEMAT
putative cytochrome c
Putative cytochrome c {ECO:0000313|EMBL:BAH39361.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27
cn_combo_scaffold_233_85
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

105155..105994
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F3_GEMAT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAH37463.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_233_86
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(105977..106807)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACR2_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40289.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_233_87
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(107045..109540)
DNA (2496bp) protein (832aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC95_GEMAT
Permease {ECO:0000313|EMBL:AHG88241.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
permease
cn_combo_scaffold_233_88
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

109727..110158
DNA (432bp) protein (144aa)
Putative uncharacterized protein id=5009187 bin=GWA2_Ignavibacteria_55_11 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
activator of Hsp90 ATPase 1 family protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
activator of HSP90 ATPase
cn_combo_scaffold_233_89
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110375..111484
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAU3_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
NHL repeat containing protein
cn_combo_scaffold_233_90
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(111632..113836)
DNA (2205bp) protein (735aa)
Glucose dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAU4_GEMAT
Pyrrolo-quinoline quinone repeat-containing protein {ECO:0000313|EMBL:AHG88641.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Pyrrolo-quinoline quinone repeat-containing protein
Displaying items 61-90 of 114 in total

View Taxonomy