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CN-SCN_Gemmatimonadetes_22x CN-SCN_Gemmatimonadetes_70_23

In projects: CN-SCN  |  SCN_92  |  gemmatimonadetes_ggkbase

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 22.61 Longest contig: 358.95 Kbp Bin length: 4.70 Mbp GC content: 70.18 %
Contigs count: 84 Features count: 4032 rRNAs count: 1 tRNAs count: 47

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38

Description

Full 52

Displaying items 1-50 of 84 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_26 GEM22_1
Domain: Bacteria (85.37%)
287 353264 bp 69.80 23.44 90.51
cn_combo_scaffold_97 GEM22_2
Class: Gemmatimonadetes (51.4%)
286 358948 bp 68.39 26.04 91.18
cn_combo_scaffold_153 GEM22_3
Species: Gemmatimonadetes bacterium KBS708 (56.98%)
265 271198 bp 70.29 21.35 95.33
cn_combo_scaffold_369 GEM22_8
Domain: Bacteria (90.86%)
186 231214 bp 70.74 22.50 92.37
cn_combo_scaffold_530 GEM22_14
Class: Gemmatimonadetes (61.84%)
152 165556 bp 70.64 21.75 92.50
cn_combo_scaffold_233 GEM22_5
Domain: Bacteria (90.35%)
114 144065 bp 70.82 21.78 89.32
cn_combo_scaffold_496 GEM22_11
Class: Gemmatimonadetes (62.96%)
108 123113 bp 70.63 20.68 94.10
cn_combo_scaffold_231 GEM22_4
Domain: Bacteria (74.77%)
107 120175 bp 69.35 25.92 86.89
cn_combo_scaffold_422 GEM22_9
Phylum: Gemmatimonadetes (56%)
100 138773 bp 70.75 22.85 89.76
cn_combo_scaffold_892 GEM22_22
Species: Gemmatimonadetes bacterium KBS708 (60%)
100 101991 bp 71.75 20.62 95.63
cn_combo_scaffold_314 GEM22_6
Phylum: Gemmatimonadetes (54.17%)
96 102158 bp 70.59 22.93 91.38
cn_combo_scaffold_559 GEM22_13
Class: Gemmatimonadetes (51.72%)
87 102719 bp 70.72 23.77 90.54
cn_combo_scaffold_692 GEM22_18
Class: Gemmatimonadetes (56.47%)
85 115215 bp 70.41 21.75 93.08
cn_combo_scaffold_917 GEM22_23
Domain: Bacteria (85.88%)
85 107121 bp 70.67 23.30 88.55
cn_combo_scaffold_774 GEM22_19
Domain: Bacteria (72.15%)
79 85884 bp 69.02 26.47 86.70
cn_combo_scaffold_996 GEM22_24
Species: Gemmatimonadetes bacterium KBS708 (51.35%)
74 85826 bp 70.83 22.84 93.25
cn_combo_scaffold_395 GEM22_7
Phylum: Gemmatimonadetes (52.86%)
70 90259 bp 70.86 23.56 91.59
cn_combo_scaffold_787 GEM22_20
Class: Gemmatimonadetes (57.14%)
70 87531 bp 70.14 22.48 91.50
cn_combo_scaffold_651 GEM22_16
Species: Gemmatimonadetes bacterium KBS708 (50%)
68 74790 bp 70.87 26.89 90.59
cn_combo_scaffold_1122 GEM22_26
Phylum: Gemmatimonadetes (52.31%)
65 69731 bp 70.73 20.64 89.49
cn_combo_scaffold_463 GEM22_10
Domain: Bacteria (76.67%)
60 82917 bp 68.33 24.04 90.79
cn_combo_scaffold_681 GEM22_17
Class: Gemmatimonadetes (64.29%)
56 80664 bp 71.15 19.41 93.26
cn_combo_scaffold_1139 GEM22_28
Domain: Bacteria (87.5%)
56 80125 bp 70.91 21.56 92.74
cn_combo_scaffold_1230 GEM22_32
Class: Gemmatimonadetes (50%)
52 58060 bp 70.51 25.79 90.68
cn_combo_scaffold_1193 GEM22_29
Species: Gemmatimonadetes bacterium KBS708 (52.94%)
51 41647 bp 68.05 21.06 90.64
cn_combo_scaffold_1256 GEM22_33
Species: Gemmatimonadetes bacterium KBS708 (50.98%)
51 56582 bp 71.56 21.71 91.43
cn_combo_scaffold_540 GEM22_12
Domain: Bacteria (87.76%)
49 73844 bp 69.60 20.64 89.90
cn_combo_scaffold_652 GEM22_15
Phylum: Gemmatimonadetes (53.06%)
49 64342 bp 70.70 23.20 92.23
cn_combo_scaffold_1050 GEM22_25
Class: Gemmatimonadetes (70.83%)
48 46212 bp 69.09 20.92 95.15
cn_combo_scaffold_803 GEM22_80
Domain: Bacteria (88.89%)
45 60090 bp 70.09 21.35 96.70
cn_combo_scaffold_915 GEM22_21
Class: Gemmatimonadetes (54.55%)
44 52245 bp 71.06 20.38 94.90
cn_combo_scaffold_2018 GEM22_42
Domain: Bacteria (58.14%)
43 31725 bp 71.65 19.34 97.71
cn_combo_scaffold_1164 GEM22_27
Class: Gemmatimonadetes (66.67%)
39 42339 bp 70.83 21.92 92.86
cn_combo_scaffold_1217 GEM22_30
Species: Gemmatimonadetes bacterium KBS708 (57.89%)
38 47250 bp 71.49 17.97 95.31
cn_combo_scaffold_1506 GEM22_36
Species: Gemmatimonadetes bacterium KBS708 (72.22%)
36 37788 bp 69.24 20.96 94.61
cn_combo_scaffold_1226 GEM22_31
Phylum: Gemmatimonadetes (57.14%)
35 40732 bp 70.42 22.61 91.39
cn_combo_scaffold_1533 GEM22_37
Class: Gemmatimonadetes (57.58%)
33 33581 bp 71.38 24.51 92.75
cn_combo_scaffold_2076 GEM22_44
Species: Gemmatimonadetes bacterium KBS708 (53.13%)
32 38247 bp 71.12 21.31 91.88
cn_combo_scaffold_2382 GEM22_76
Domain: Bacteria (61.29%)
31 23053 bp 66.78 23.51 72.50
cn_combo_scaffold_2303 GEM22_75
Domain: Bacteria (83.87%)
31 30952 bp 68.10 26.74 86.35
cn_combo_scaffold_1419 GEM22_34
Domain: Bacteria (81.48%)
27 36369 bp 66.95 19.56 83.15
cn_combo_scaffold_1887 GEM22_40
Species: Gemmatimonadetes bacterium KBS708 (59.26%)
27 28733 bp 71.11 22.44 96.11
cn_combo_scaffold_2253 GEM22_45
Species: Gemmatimonadetes bacterium KBS708 (50%)
26 24290 bp 70.55 17.76 91.04
cn_combo_scaffold_2987 GEM22_52
Class: Gemmatimonadetes (57.69%)
26 20391 bp 70.08 26.96 87.22
cn_combo_scaffold_1734 GEM22_39
Class: Gemmatimonadetes (60%)
25 30739 bp 69.94 19.39 89.25
cn_combo_scaffold_2279 GEM22_46
Species: Gemmatimonadetes bacterium KBS708 (56%)
25 23927 bp 70.88 20.84 95.11
cn_combo_scaffold_2278 GEM22_47
Species: Gemmatimonadetes bacterium KBS708 (76%)
25 31115 bp 68.99 27.48 82.11
cn_combo_scaffold_2940 GEM22_51
Domain: Bacteria (69.57%)
23 22800 bp 68.45 24.94 88.10
cn_combo_scaffold_1606 GEM22_38
Domain: Bacteria (72.73%)
22 32484 bp 69.79 21.13 91.63
cn_combo_scaffold_3108 GEM22_54
Class: Gemmatimonadetes (50%)
22 28594 bp 71.53 20.99 93.77
Displaying items 1-50 of 84 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.