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cn_combo_scaffold_2018

Alias: GEM22_42

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2018_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2..721
DNA (720bp) protein (240aa)
Regulatory protein RecX n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XLM0_SORCE
Regulatory protein recX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_2
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(722..1882)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000364EF39
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RBG_16_Gamma2_60_9_curated
cytochrome oxidase assembly
cn_combo_scaffold_2018_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1879..2511)
DNA (633bp) protein (211aa)
methyl-viologen-reducing hydrogenase subunit delta Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
id=12557744 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cn_combo_scaffold_2018_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2538..4163)
DNA (1626bp) protein (542aa)
methyl-viologen-reducing hydrogenase subunit delta id=12557743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methyl-viologen-reducing hydrogenase subunit delta Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
methyl-viologen-reducing hydrogenase subunit delta
cn_combo_scaffold_2018_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4228..4755
DNA (528bp) protein (176aa)
Rrf2 family DNA binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9D9_GEMAT
Rrf2 family DNA binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Rrf2 family DNA binding protein
cn_combo_scaffold_2018_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4787..4957
DNA (171bp) protein (57aa)
seg 29..39 id=12557741 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
seg 29..39 Tax=RBG_16_Gemmatimonadetes_66_8_curated
cn_combo_scaffold_2018_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4965..5570
DNA (606bp) protein (202aa)
cyoA; heme/copper-type cytochrome/quinol oxidase subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=12557740 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Heme/copper-type cytochrome/quinol oxidase, subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Heme/copper-type cytochrome/quinol oxidase, subunit 2
cn_combo_scaffold_2018_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

5567..7315
DNA (1749bp) protein (583aa)
cyoB; heme/copper-type cytochrome/quinol oxidase subunit 1; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cytochrome c oxidase subunit I id=12557739 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytochrome c oxidase subunit I
cn_combo_scaffold_2018_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7320..8219
DNA (900bp) protein (300aa)
electron transport protein SCO1/SenC; K07152 id=12557738 bin=CNBR_ACIDO species=Oceanicaulis sp. HTCC2633 genus=Oceanicaulis taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
electron transport protein SCO1/SenC Tax=RBG_16_Gemmatimonadetes_66_8_curated
electron transport protein SCO1/SenC
cn_combo_scaffold_2018_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


8285..11032
DNA (2748bp) protein (916aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
Alanine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4D2_GEMAT
Alanine-tRNA ligase, eukaryota/bacteria rbh
cn_combo_scaffold_2018_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11029..11340
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4D1_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38956.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_2018_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11337..12089
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4D0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38955.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_2018_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12117..12707
DNA (591bp) protein (197aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isom
Phosphoheptose isomerase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BHE3_MEISD
Phosphoheptose isomerase
cn_combo_scaffold_2018_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12735..13493
DNA (759bp) protein (253aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C9_GEMAT
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AHG91055.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13484..14458
DNA (975bp) protein (325aa)
UPI0003D5F637 related cluster n=1 Tax=unknown RepID=UPI0003D5F637
Asparaginase/glutaminase
Asparaginase/glutaminase {ECO:0000313|EMBL:AHG91054.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14476..15882
DNA (1407bp) protein (469aa)
tRNA nucleotidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C8_GEMAT
Polynucleotide adenylyltransferase region
Polynucleotide adenylyltransferase region {ECO:0000313|EMBL:AHG91050.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15884..16429
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C7_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91047.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16426..17796
DNA (1371bp) protein (457aa)
ATPase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C6_GEMAT
MgsA AAA+ ATPase domain-containing protein
MgsA AAA+ ATPase domain-containing protein {ECO:0000313|EMBL:AHG91045.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17798..18280
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C5_GEMAT
Late embryogenesis abundant protein 2
Late embryogenesis abundant protein 2 {ECO:0000313|EMBL:AHG91044.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2018_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18357..19778
DNA (1422bp) protein (474aa)
GTPase HflX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C4_GEMAT
GTP-binding protein, HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708
cn_combo_scaffold_2018_21
Picea sitchensis, Picea, Pinales, Pinidae, Streptophyta, Viridiplantae

Not on your lists

19810..20817
DNA (1008bp) protein (336aa)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9P2P2_PICSI
Putative uncharacterized protein {ECO:0000313|EMBL:ABK27153.1}; TaxID=3332 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Pinidae; Pinales; Pinaceae; Picea.
cn_combo_scaffold_2018_trna_1
unknown

Not on your lists

comp(20903..20976)
DNA (74bp)
transferRNA
cn_combo_scaffold_2018_22
unknown

Not on your lists

21236..21424
DNA (189bp) protein (63aa)

This feature has no annotations

cn_combo_scaffold_2018_23
unknown

Not on your lists

21421..21708
DNA (288bp) protein (96aa)

This feature has no annotations

cn_combo_scaffold_2018_24
unknown

Not on your lists

21705..21872
DNA (168bp) protein (56aa)

This feature has no annotations

cn_combo_scaffold_2018_25
unknown

Not on your lists

21865..22044
DNA (180bp) protein (60aa)

This feature has no annotations

cn_combo_scaffold_2018_26
unknown

Not on your lists

22037..22249
DNA (213bp) protein (71aa)

This feature has no annotations

cn_combo_scaffold_2018_27
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22355..23836
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037562CF
dcm; C-5 cytosine-specific DNA methylase
C-5 cytosine-specific DNA methylase {ECO:0000313|EMBL:EMT54261.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelens
cn_combo_scaffold_2018_28
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23806..25056
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A434_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38859.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_2018_29
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25053..26414
DNA (1362bp) protein (454aa)
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase {ECO:0000313|EMBL:ADU52427.1}; EC=3.6.1.- {ECO:0000313|EMBL:ADU52427.1};; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family X
Primary replicative DNA helicase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLI5_THEM7
Displaying items 1-30 of 43 in total

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