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cn_combo_scaffold_1122

Alias: GEM22_26

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1122_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(55..1401)
DNA (1347bp) protein (449aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAA
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE4_GEMAT
gid; tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid rbh
cn_combo_scaffold_1122_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1534..4164)
DNA (2631bp) protein (877aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=861299 species="Bacteria; Gemmatimon
DNA topoisomerase 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE5_GEMAT
DNA topoisomerase I
cn_combo_scaffold_1122_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4168..4596)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE6_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39552.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1122_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4600..4881)
DNA (282bp) protein (94aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemma
Shikimate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE7_GEMAT
cn_combo_scaffold_1122_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5108..6337)
DNA (1230bp) protein (410aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE8_GEMAT
Chorismate synthase
cn_combo_scaffold_1122_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6427..8874)
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39555.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1122_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8894..10927)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF0_GEMAT
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:AHG91513.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10924..11544)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF1_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91514.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11541..12152)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF2_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39558.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1122_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12155..12895)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39559.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1122_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12920..13963)
DNA (1044bp) protein (348aa)
Putative type IV pilus assembly protein PilM n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF4_GEMAT
pilM; putative type IV pilus assembly protein PilM
Putative type IV pilus assembly protein PilM {ECO:0000313|EMBL:BAH39560.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
cn_combo_scaffold_1122_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14193..15443)
DNA (1251bp) protein (417aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91519.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_13
unknown

Not on your lists

comp(15440..16351)
DNA (912bp) protein (304aa)

This feature has no annotations

cn_combo_scaffold_1122_14
unknown

Not on your lists

comp(16342..16647)
DNA (306bp) protein (102aa)

This feature has no annotations

cn_combo_scaffold_1122_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16905..17321)
DNA (417bp) protein (139aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative pilin
cn_combo_scaffold_1122_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17662..18477)
DNA (816bp) protein (272aa)
Glycosyl transferase family 2 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVW3_OPITP
NtrC family two-component response regulator Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycosyl transferase family protein
cn_combo_scaffold_1122_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18474..20009)
DNA (1536bp) protein (512aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IR68_9PLAN
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
cn_combo_scaffold_1122_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20006..21631)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3A9_ISOPI
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
cn_combo_scaffold_1122_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21643..23022)
DNA (1380bp) protein (460aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator
NtrC family two-component response regulator {ECO:0000313|EMBL:BAH39567.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
cn_combo_scaffold_1122_20
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23019..24701)
DNA (1683bp) protein (561aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" s
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase rbh
cn_combo_scaffold_1122_21
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25018..25836
DNA (819bp) protein (273aa)
methyltransferase type 11 n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003820027
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX22284.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
cn_combo_scaffold_1122_22
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25904..27223
DNA (1320bp) protein (440aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X1_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH39569.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
cn_combo_scaffold_1122_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27204..27647
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X2_GEMAT
Class I peptide chain release factor
Class I peptide chain release factor {ECO:0000313|EMBL:AHG91527.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27803..28102
DNA (300bp) protein (100aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
cn_combo_scaffold_1122_25

Not on your lists

28229..28765
DNA (537bp) protein (179aa)
DNA-3-methyladenine glycosylase I n=1 Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1QZR3_CHRSD
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:AHN97964.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
DNA-3-methyladenine glycosylase I
cn_combo_scaffold_1122_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(28899..31868)
DNA (2970bp) protein (990aa)
Glycosyl hydrolase, BNR repeat-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELD1_RUNSL
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AHG89039.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
glycosyl hydrolase BNR repeat-containing protein
cn_combo_scaffold_1122_27
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31865..32794)
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D7Q1_MYXXD
Membrane protein {ECO:0000313|EMBL:AKF81316.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fu
hypothetical protein
cn_combo_scaffold_1122_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(32791..34059)
DNA (1269bp) protein (423aa)
Putative sodium/dicarboxylate symporter n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7F9_GEMAT
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AHG87929.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(34135..34971)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91528.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1122_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

35172..36152
DNA (981bp) protein (327aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJQ0_HALO1
pyridoxal-5'-phosphate-dependent protein subunit beta
Displaying items 1-30 of 65 in total

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